Factsheet for PGSC0003DMT400061055

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104260.2.1	Tomato	mitochondrion	93.29	92.67
KRH10441	Soybean	mitochondrion	44.97	41.74
KRH44018	Soybean	mitochondrion	43.96	41.32
GSMUA_Achr7P13060_001	Banana	mitochondrion	26.51	32.11
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.85	30.65
PGSC0003DMT400058464	Potato	nucleus	28.52	26.73
TraesCS6D01G309800.1	Wheat	mitochondrion	26.85	25.16
TraesCS6A01G330700.1	Wheat	mitochondrion	26.85	24.54
TraesCS7D01G170800.1	Wheat	mitochondrion	26.17	24.38
TraesCS7B01G074800.1	Wheat	mitochondrion	26.17	24.22
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	25.84	24.14
Os02t0767600-00	Rice	mitochondrion	26.51	24.09
Zm00001d052154_P001	Maize	mitochondrion	25.5	23.9
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	26.51	23.72
HORVU0Hr1G019650.1	Barley	mitochondrion	25.17	23.66
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.85	23.53
TraesCS6B01G361600.1	Wheat	mitochondrion	25.84	22.85
Zm00001d018190_P001	Maize	mitochondrion	25.5	22.82
EER89401	Sorghum	mitochondrion, nucleus	25.5	22.75
PGSC0003DMT400002370	Potato	cytosol	24.5	22.6
PGSC0003DMT400079301	Potato	nucleus	22.48	22.33
KXG31176	Sorghum	plastid	26.51	22.19
PGSC0003DMT400082489	Potato	nucleus	22.82	21.12
VIT_12s0034g01390.t01	Wine grape	mitochondrion	29.87	19.73
PGSC0003DMT400026380	Potato	nucleus	25.5	19.64
PGSC0003DMT400016233	Potato	nucleus	25.17	19.04
PGSC0003DMT400046527	Potato	nucleus	22.48	18.61
PGSC0003DMT400005512	Potato	mitochondrion	22.15	17.1
PGSC0003DMT400081469	Potato	nucleus	18.79	14.81
PGSC0003DMT400069320	Potato	nucleus	19.8	14.68
PGSC0003DMT400068309	Potato	cytosol	16.78	12.56
PGSC0003DMT400071362	Potato	nucleus	19.46	12.26
PGSC0003DMT400003515	Potato	nucleus	14.77	11.86
PGSC0003DMT400063293	Potato	nucleus	15.77	10.88

Protein Annotations

EntrezGene:102602501	Gene3D:3.30.40.10	MapMan:35.1	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1C6Z4
PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400023756	PGSC:PGSC0003DMG400023756	EnsemblPlants:PGSC0003DMT400061055	PFscan:PS50089	PANTHER:PTHR44290
PANTHER:PTHR44290:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002952996	RefSeq:XP_006349435.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023756]

Coordinates

chr1:-:80910129..80911736

Molecular Weight (calculated)

35018.3 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.611

Length

298 amino acids

Sequence
(BLAST)

001: MPSIPRARVI VNGVQRMRTY HYYWCRHCQR SIRTTSANPF EILCPHCYGQ VFYELDVTRP RLVLSNVTRL QPQPSSNSRL LDALALMVDP PIRQQNNDGD
101: ENHRRTRQRT RVILQFIGPD DQPIRPVSPD ENAFYLPSLQ ELTQNDRPGP PPTPSSAIDA LPRIYLTPNL LENDSVCPVC KDEFEVGIEV IELPCKHFYH
201: SECIVPWLRL HNTCPVCRYQ LQGFSNNEDQ NGYTYEFNEQ EEEEENIQNP LIWGWTQLTS LWPFSLMSSW RHRYFNTFET TTSAFPRGRA WWNPWIFS

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.