Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052154_P001 | Maize | mitochondrion | 77.78 | 81.45 |
| KXG31176 | Sorghum | plastid | 82.28 | 76.97 |
| Os02t0767600-00 | Rice | mitochondrion | 69.97 | 71.04 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 64.26 | 67.3 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 67.27 | 67.27 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 67.27 | 66.47 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 63.66 | 65.03 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 41.14 | 55.69 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 50.15 | 49.12 |
| CDX74533 | Canola | cytosol | 30.33 | 34.59 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 34.23 | 34.23 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 26.73 | 34.1 |
| Solyc11g012950.1.1 | Tomato | cytosol | 33.33 | 33.33 |
| PGSC0003DMT400002370 | Potato | cytosol | 31.83 | 32.82 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.63 | 31.38 |
| CDY01669 | Canola | plastid | 30.33 | 31.27 |
| KRH64713 | Soybean | nucleus | 33.03 | 31.25 |
| AT1G60360.1 | Thale cress | nucleus | 29.43 | 29.97 |
| Zm00001d047476_P001 | Maize | mitochondrion | 25.23 | 28.77 |
| Zm00001d045625_P001 | Maize | cytosol | 24.02 | 25.81 |
| PGSC0003DMT400061055 | Potato | extracellular | 22.82 | 25.5 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 22.82 | 25.33 |
| KRH10441 | Soybean | mitochondrion | 23.72 | 24.61 |
| Zm00001d028590_P001 | Maize | plastid | 20.42 | 24.46 |
| KRH44018 | Soybean | mitochondrion | 23.12 | 24.29 |
| Zm00001d047824_P001 | Maize | plastid | 20.12 | 24.1 |
| Zm00001d043183_P001 | Maize | plastid | 23.12 | 23.69 |
| Zm00001d035677_P001 | Maize | plastid | 23.72 | 22.7 |
| Zm00001d012564_P001 | Maize | mitochondrion | 23.12 | 22.25 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 25.23 | 21.82 |
| Zm00001d011076_P001 | Maize | plastid | 24.92 | 21.45 |
| Zm00001d040445_P001 | Maize | nucleus | 22.22 | 21.39 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 28.83 | 21.29 |
| Zm00001d008237_P001 | Maize | nucleus | 22.22 | 21.2 |
| Zm00001d032646_P001 | Maize | cytosol | 23.72 | 21.07 |
| Zm00001d047560_P001 | Maize | cytosol | 18.62 | 20.06 |
| Zm00001d010635_P001 | Maize | nucleus | 18.62 | 19.87 |
| Zm00001d038528_P001 | Maize | cytosol | 18.92 | 18.92 |
| Zm00001d013005_P002 | Maize | nucleus | 19.22 | 17.25 |
| Zm00001d046663_P001 | Maize | cytosol | 14.11 | 15.77 |
| Zm00001d051736_P001 | Maize | cytosol | 15.32 | 15.45 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 13.21 | 15.22 |
| Zm00001d053704_P001 | Maize | cytosol | 13.81 | 12.92 |
Protein Annotations
| EnsemblPlants:Zm00001d018190_P001 | EnsemblPlants:Zm00001d018190_T001 | EnsemblPlantsGene:Zm00001d018190 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF3 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:AQK75219.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000843A9E1 |
| UniProt:A0A1D6HLC0 | MapMan:35.1 | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr5:+:216100153..216101154
Molecular Weight (calculated)
36533.2 Da
IEP (calculated)
8.442
GRAVY (calculated)
-0.517
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATTAPVRH RTCRMYWCYQ CGRALRIISY PSTDVFCPRC FGRFLHEIDL PARPAFPPPH FLPHPFHPQR QHDGHPRRWV IYGGEPATTV PGRAFRQPAA
101: PAQGPATHPA PAPAPVRRRV PSPPPPPPVL RRPTTAPAVD LGNYFTGPNL NNLIEELTQN DRPGPAPAPP SAIDSLPTVR ITGAHLSDGS QCPVCKEDFE
201: LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRYQLPGAG STSNGGSQAA PRGGSDGDRN SRNGERGREP PTLVRWGPFS WLFPPHGMDD PDDAWEHGRR
301: GRHDAADAGG NDMTALQSFV LVATCVFFFS FLV
101: PAQGPATHPA PAPAPVRRRV PSPPPPPPVL RRPTTAPAVD LGNYFTGPNL NNLIEELTQN DRPGPAPAPP SAIDSLPTVR ITGAHLSDGS QCPVCKEDFE
201: LGEAARQLPC KHVYHSDCIV PWLRLHNSCP VCRYQLPGAG STSNGGSQAA PRGGSDGDRN SRNGERGREP PTLVRWGPFS WLFPPHGMDD PDDAWEHGRR
301: GRHDAADAGG NDMTALQSFV LVATCVFFFS FLV
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.