CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g03270.t01	Wine grape	nucleus	46.31	48.95
Solyc11g012950.1.1	Tomato	cytosol	43.47	45.95
CDX74533	Canola	cytosol	38.07	45.89
PGSC0003DMT400002370	Potato	cytosol	41.48	45.2
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	39.2	42.46
CDY01669	Canola	plastid	38.35	41.8
AT1G60360.1	Thale cress	nucleus	38.64	41.59
GSMUA_Achr7P13060_001	Banana	mitochondrion	28.12	40.24
Os02t0767600-00	Rice	mitochondrion	31.82	34.15
TraesCS7D01G170800.1	Wheat	mitochondrion	30.97	34.06
Zm00001d052154_P001	Maize	mitochondrion	30.68	33.96
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	30.68	33.86
TraesCS7B01G074800.1	Wheat	mitochondrion	30.97	33.85
HORVU0Hr1G019650.1	Barley	mitochondrion	30.4	33.75
TraesCS6D01G309800.1	Wheat	mitochondrion	30.11	33.33
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.1	33.24
Zm00001d018190_P001	Maize	mitochondrion	31.25	33.03
EER89401	Sorghum	mitochondrion, nucleus	31.25	32.93
TraesCS6A01G330700.1	Wheat	mitochondrion	30.4	32.82
TraesCS6B01G361600.1	Wheat	mitochondrion	30.68	32.05
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	30.11	31.83
KXG31176	Sorghum	plastid	30.97	30.62
KRH18631	Soybean	nucleus	24.72	28.43
KRH18634	Soybean	nucleus	18.75	27.97
KRH71659	Soybean	nucleus	23.86	27.18
KRH14643	Soybean	nucleus	25.85	27.08
KRH33121	Soybean	nucleus	23.3	26.54
KRH36132	Soybean	nucleus	21.31	26.22
KRG90622	Soybean	nucleus	21.59	25.5
KRH10441	Soybean	mitochondrion	23.01	25.23
KRG99997	Soybean	plastid	22.16	25.0
KRH73496	Soybean	mitochondrion	26.14	24.8
KRH49133	Soybean	plastid	21.59	24.76
KRH44018	Soybean	mitochondrion	22.16	24.61
KRH23103	Soybean	nucleus	21.59	24.2
KRH10229	Soybean	nucleus	21.59	24.2
KRH38895	Soybean	nucleus	25.28	23.67
KRH09399	Soybean	nucleus	24.43	23.31
KRH29763	Soybean	nucleus	23.58	22.99
KRG97885	Soybean	mitochondrion	23.01	22.69
KRH30994	Soybean	nucleus	25.28	22.65
KRH24759	Soybean	nucleus	23.01	22.44
KRG97316	Soybean	nucleus	21.02	21.51
KRH73053	Soybean	nucleus	22.16	19.95
KRG90607	Soybean	nucleus	19.03	19.88
KRH36150	Soybean	nucleus	18.75	19.82
KRH70139	Soybean	nucleus	17.61	19.44
KRH15082	Soybean	nucleus	21.02	19.37
KRH08483	Soybean	cytosol, nucleus, plastid	17.61	19.25
KRH56750	Soybean	cytosol	13.92	14.33
KRH03189	Soybean	nucleus	13.07	12.96
KRH18313	Soybean	nucleus	13.35	12.57
KRG93748	Soybean	nucleus, plastid	13.07	12.11
KRH40635	Soybean	nucleus, plastid	17.61	11.25
KRH00522	Soybean	plastid	17.61	11.09

Protein Annotations

EntrezGene:100787399	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02002772	EnsemblPlantsGene:GLYMA_04G251600	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	UniProt:K7KM81	EnsemblPlants:KRH64713	ProteinID:KRH64713	ProteinID:KRH64713.1
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002950E8D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:51835222..51837231

Molecular Weight (calculated)

40055.4 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.785

Length

352 amino acids

Sequence
(BLAST)

001: MSLSPPRERN NNGNAQARTF QLYYCFQCNR TVRAAPDNNN PTQITCPRCF GQFICEINMP RPRLVVDFTT PDPSPEARLL EALSLMMDPP IRRFPGLIQP
101: QPEELPVYHR HRRPRRRHPE PEPEPQHRPR TWIVFQPMDP SNPFEPINIP NRRGPGPIHG PGPIPRGLDA RDYFFGPGLN ELIEQITEND RQGPAPAPER
201: AIEAIPTVKI ESAHLKENSQ CPVCQEEFEV GGEARELQCK HIYHSDCIVP WLRLHNSCPV CRHEVPVPSS SSSSEGDECV GDGGEGRLQR CLRWTRRFTS
301: LWPFNARYRR RVHPQGNNTT VAASSSRGYS PSNSPTLFSR AANRRQPSCC IL

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.