Factsheet for VIT_18s0001g03270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002370	Potato	cytosol	46.25	47.68
CDX74533	Canola	cytosol	41.74	47.6
Solyc11g012950.1.1	Tomato	cytosol	46.85	46.85
AT1G60360.1	Thale cress	nucleus	45.65	46.48
KRH64713	Soybean	nucleus	48.95	46.31
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.44	45.54
CDY01669	Canola	plastid	42.94	44.27
GSMUA_Achr7P13060_001	Banana	mitochondrion	32.43	43.9
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	28.83	36.78
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	34.53	36.05
TraesCS6D01G309800.1	Wheat	mitochondrion	34.23	35.85
HORVU0Hr1G019650.1	Barley	mitochondrion	33.93	35.65
TraesCS7D01G170800.1	Wheat	mitochondrion	34.23	35.62
TraesCS7B01G074800.1	Wheat	mitochondrion	34.23	35.4
Os02t0767600-00	Rice	mitochondrion	34.83	35.37
Zm00001d052154_P001	Maize	mitochondrion	33.33	34.91
TraesCS6A01G330700.1	Wheat	mitochondrion	33.93	34.66
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	34.53	34.53
TraesCS6B01G361600.1	Wheat	mitochondrion	34.83	34.42
Zm00001d018190_P001	Maize	mitochondrion	34.23	34.23
VIT_08s0040g00590.t01	Wine grape	nucleus	31.23	33.12
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	33.33	32.65
EER89401	Sorghum	mitochondrion, nucleus	32.43	32.34
KXG31176	Sorghum	plastid	33.93	31.74
VIT_06s0009g02350.t01	Wine grape	mitochondrion	29.43	29.17
VIT_17s0053g00320.t01	Wine grape	plastid	27.03	24.39
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	27.63	23.83
VIT_12s0034g01390.t01	Wine grape	mitochondrion	30.93	22.84
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	21.32	21.26
VIT_06s0004g00120.t01	Wine grape	nucleus	22.82	20.65
VIT_17s0000g08400.t01	Wine grape	nucleus	7.81	18.18
VIT_08s0007g00720.t01	Wine grape	plastid	26.73	17.25
VIT_17s0000g04730.t01	Wine grape	nucleus	16.82	12.76
VIT_14s0083g00710.t01	Wine grape	nucleus	14.11	12.02
VIT_08s0056g00320.t01	Wine grape	mitochondrion	21.02	11.86

Protein Annotations

EntrezGene:100262515	wikigene:100262515	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM462015	ProteinID:CAN68008
ProteinID:CAN68008.1	ProteinID:CCB45501	ProteinID:CCB45501.1	UniProt:F6H0T2	EMBL:FN595227	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100262515
wikigene:LOC100262515	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF4
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00015C7854	ArrayExpress:VIT_18s0001g03270	EnsemblPlantsGene:VIT_18s0001g03270	EnsemblPlants:VIT_18s0001g03270.t01
RefSeq:XP_002284442	RefSeq:XP_002284442.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:3233803..3234804

Molecular Weight (calculated)

38186.9 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.875

Length

333 amino acids

Sequence
(BLAST)

001: MSLSPPRERN NGDRTYQFYW CYQCNRSVRI ASDNPSQIIC PRCLGQFLQE IDTTRPRAFN EIITWDPFPE ARLLEALSLV LDPPLRGLNN GVGRGDEAET
101: EAARNRGRRW LRRRSHSREH WEAEADTGVP GRRRNNELGG RLGWPFGNGL GAQGRTWIVL RPTGPPGQNG PFPQSENMRP PRFELRDFFS GPGLNELIEE
201: LTQNDRPGPP PAPDSAINAM PTVKITPTHL INDSHCPVCK EEFKVGEEVR ELPCNHVYHS DCIVPWLQLH NSCPVCRHEV PVPSDESDES HEGEDRRVRC
301: MRLRQLASLW PFRSRYRRIN PQDRDVTPHR GES

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.