Factsheet for VIT_06s0004g05090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15040_001	Banana	mitochondrion	56.22	68.67
Solyc06g005650.2.1	Tomato	extracellular	33.68	65.0
KRH10229	Soybean	nucleus	52.59	64.65
KRH23103	Soybean	nucleus	52.33	64.33
GSMUA_Achr10P...	Banana	mitochondrion	55.96	64.09
PGSC0003DMT400005512	Potato	mitochondrion	62.18	62.18
KRH24759	Soybean	nucleus	57.51	61.5
KRH29763	Soybean	nucleus	57.51	61.5
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	55.7	61.25
GSMUA_Achr5P07070_001	Banana	nucleus	51.3	60.18
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	53.63	60.17
Os05t0110000-01	Rice	mitochondrion	51.04	59.16
Os03t0271600-01	Rice	plastid	42.75	59.14
GSMUA_Achr2P19140_001	Banana	mitochondrion	55.44	59.12
TraesCS4A01G095800.1	Wheat	cytosol	41.97	57.86
TraesCS4B01G209100.1	Wheat	plastid	41.97	57.86
TraesCS4D01G209500.1	Wheat	plastid	41.97	57.86
EER95109	Sorghum	plastid	41.19	57.82
Zm00001d028590_P001	Maize	plastid	41.45	57.55
Zm00001d047824_P001	Maize	plastid	41.19	57.19
GSMUA_Achr10P...	Banana	mitochondrion	59.33	56.97
TraesCS3D01G532300.1	Wheat	cytosol	55.18	55.18
Zm00001d035677_P001	Maize	plastid	49.74	55.17
TraesCS1A01G029800.1	Wheat	cytosol	55.96	54.14
TraesCS3B01G595200.1	Wheat	cytosol	55.44	53.63
TraesCS1B01G036900.1	Wheat	cytosol	55.44	53.63
HORVU1Hr1G004330.14	Barley	cytosol	55.7	53.62
TraesCS1D01G030300.1	Wheat	nucleus	55.18	52.99
EES17560	Sorghum	plastid	53.37	49.88
CDY61251	Canola	cytosol	46.63	49.86
CDX80258	Canola	plastid	45.85	49.86
Os01t0972000-01	Rice	nucleus	43.01	49.7
HORVU3Hr1G041030.1	Barley	mitochondrion	49.74	49.61
Zm00001d011076_P001	Maize	plastid	49.74	49.61
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	47.15	48.79
CDY53450	Canola	cytosol	40.41	48.45
HORVU7Hr1G055010.1	Barley	cytosol	27.72	48.42
Bra020313.1-P	Field mustard	plastid	47.93	47.56
AT3G46620.1	Thale cress	cytosol, plastid	48.19	47.09
CDX99105	Canola	cytosol, plastid	39.38	46.91
Bra002559.1-P	Field mustard	plastid	48.19	46.85
Bra006709.1-P	Field mustard	plastid	47.67	46.82
CDX88709	Canola	cytosol, plastid	47.67	46.7
HORVU4Hr1G060130.1	Barley	cytosol	41.97	46.02
CDY48679	Canola	cytosol, plastid	39.64	45.81
HORVU3Hr1G115000.7	Barley	mitochondrion	46.11	45.41
CDY33046	Canola	plastid	40.16	45.32
GSMUA_Achr10P...	Banana	nucleus	32.64	44.68
VIT_08s0007g00720.t01	Wine grape	plastid	59.59	44.57
AT5G59550.2	Thale cress	nucleus, plastid	49.22	37.11
VIT_08s0040g00590.t01	Wine grape	nucleus	26.94	33.12
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	20.73	30.65
VIT_17s0000g08400.t01	Wine grape	nucleus	10.62	28.67
VIT_06s0009g02350.t01	Wine grape	mitochondrion	24.61	28.27
VIT_18s0001g03270.t01	Wine grape	nucleus	23.83	27.63
VIT_17s0053g00320.t01	Wine grape	plastid	24.87	26.02
VIT_06s0004g00120.t01	Wine grape	nucleus	22.8	23.91
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	19.43	22.46
VIT_12s0034g01390.t01	Wine grape	mitochondrion	23.06	19.73
VIT_14s0083g00710.t01	Wine grape	nucleus	15.54	15.35
VIT_17s0000g04730.t01	Wine grape	nucleus	17.36	15.26
VIT_08s0056g00320.t01	Wine grape	mitochondrion	23.32	15.25

Protein Annotations

EntrezGene:100265659	wikigene:100265659	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM454201	ProteinID:CAN72193
ProteinID:CAN72193.1	ProteinID:CCB43551	ProteinID:CCB43551.1	InterPro:DUF1117	UniProt:F6GUZ2	EMBL:FN594951
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006464
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0030001	GO:GO:0042787	GO:GO:0043161
GO:GO:0046873	GO:GO:0055085	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100265659
wikigene:LOC100265659	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC63139	TIGR:TC63610	UniParc:UPI00021094DE
ArrayExpress:VIT_06s0004g05090	EnsemblPlantsGene:VIT_06s0004g05090	EnsemblPlants:VIT_06s0004g05090.t01	unigene:Vvi.8819	RefSeq:XP_002283212	RefSeq:XP_002283212.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:6020330..6022057

Molecular Weight (calculated)

42572.8 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.542

Length

386 amino acids

Sequence
(BLAST)

001: MASTTSYWCH RCTRFVRVWA QDSIVCPYCE SGFLEEIEAT PRSENHHRRF PATAMYMLGN NRPDSEQSAN LGLRRSRRNA GDRSPFNPVI VLRGPADGGG
101: GEGGVVERSS FELYYDDGAG SGLRPLPATM SEFLMGSGFD RLLEQLSQIE INGFGRGEHP PASKAAVESM PTIEIVSSHI VTELHCAVCK EAFQLGSEAR
201: EMPCKHIYHS DCILPWLSLR NSCPVCRHEL PTDVPGTRNS PVSGNEALSP APNEEETVGL TIWRLPGGGF AVGRFSGGRR AGERELPVVY TEMDGGFNNS
301: GAPRRISWAS RRSRSRESGG SLGRAFRNIF SFLGRFRSSS SSSSRSTSEP GSITRSHSHS SSVFSRYVRR RSRAWVLEDQ SGNSRW

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.