Factsheet for Bra002559.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33046	Canola	plastid	85.14	98.83
CDX80258	Canola	plastid	86.9	97.18
Bra020313.1-P	Field mustard	plastid	82.12	83.8
Bra006709.1-P	Field mustard	plastid	80.86	81.68
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.0	71.31
AT5G59550.2	Thale cress	nucleus, plastid	82.62	64.06
Os03t0271600-01	Rice	plastid	38.04	54.12
KRH10229	Soybean	nucleus	42.07	53.18
GSMUA_Achr7P15040_001	Banana	mitochondrion	42.32	53.16
EER95109	Sorghum	plastid	36.78	53.09
KRH23103	Soybean	nucleus	41.81	52.87
Zm00001d028590_P001	Maize	plastid	36.78	52.52
Zm00001d047824_P001	Maize	plastid	36.78	52.52
TraesCS4D01G209500.1	Wheat	plastid	37.03	52.5
TraesCS4A01G095800.1	Wheat	cytosol	37.03	52.5
TraesCS4B01G209100.1	Wheat	plastid	37.03	52.5
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.81	48.26
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	46.85	48.19
KRH29763	Soybean	nucleus	43.58	47.92
KRH24759	Soybean	nucleus	43.32	47.65
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	42.07	47.58
Solyc06g005650.2.1	Tomato	extracellular	23.68	47.0
GSMUA_Achr10P...	Banana	mitochondrion	39.8	46.88
Bra005020.1-P	Field mustard	nucleus, plastid	39.04	45.45
PGSC0003DMT400005512	Potato	mitochondrion	43.83	45.08
GSMUA_Achr5P07070_001	Banana	nucleus	37.28	44.98
TraesCS3D01G532300.1	Wheat	cytosol	43.32	44.56
Zm00001d035677_P001	Maize	plastid	38.79	44.25
Os05t0110000-01	Rice	mitochondrion	37.03	44.14
GSMUA_Achr2P19140_001	Banana	mitochondrion	40.05	43.92
Bra000143.1-P	Field mustard	nucleus	41.31	43.73
TraesCS3B01G595200.1	Wheat	cytosol	43.83	43.61
HORVU7Hr1G055010.1	Barley	cytosol	23.93	42.99
TraesCS1A01G029800.1	Wheat	cytosol	43.07	42.86
TraesCS1D01G030300.1	Wheat	nucleus	43.07	42.54
TraesCS1B01G036900.1	Wheat	cytosol	42.57	42.36
HORVU1Hr1G004330.14	Barley	cytosol	42.57	42.14
EES17560	Sorghum	plastid	43.58	41.89
HORVU4Hr1G060130.1	Barley	cytosol	37.03	41.76
GSMUA_Achr10P...	Banana	mitochondrion	41.56	41.04
Zm00001d011076_P001	Maize	plastid	39.55	40.57
GSMUA_Achr10P...	Banana	nucleus	28.46	40.07
HORVU3Hr1G041030.1	Barley	mitochondrion	37.78	38.76
Os01t0972000-01	Rice	nucleus	31.49	37.43
HORVU3Hr1G115000.7	Barley	mitochondrion	35.77	36.22
Bra001767.1-P	Field mustard	nucleus	18.64	34.58
Bra030136.1-P	Field mustard	cytosol	17.38	28.51
Bra014684.1-P	Field mustard	nucleus	13.6	28.12
Bra038246.1-P	Field mustard	nucleus	22.67	27.69
Bra004589.1-P	Field mustard	nucleus	16.88	27.46
Bra007253.1-P	Field mustard	mitochondrion, nucleus	21.41	27.42
Bra030854.1-P	Field mustard	nucleus	21.41	27.24
Bra000207.1-P	Field mustard	mitochondrion, nucleus	21.66	27.13
Bra035835.1-P	Field mustard	nucleus	21.66	26.3
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.16	25.85
Bra037999.1-P	Field mustard	nucleus	18.39	25.17
Bra027436.1-P	Field mustard	nucleus	19.4	24.92
Bra002823.1-P	Field mustard	nucleus	20.91	23.58
Bra037109.1-P	Field mustard	nucleus	19.65	23.35
Bra019109.1-P	Field mustard	nucleus	18.89	23.29
Bra037800.1-P	Field mustard	cytosol	17.38	22.85
Bra026444.1-P	Field mustard	nucleus	20.65	22.1
Bra011215.1-P	Field mustard	cytosol	12.85	21.98
Bra014266.1-P	Field mustard	nucleus	19.4	17.46
Bra013006.1-P	Field mustard	nucleus	16.62	15.83
Bra028935.1-P	Field mustard	nucleus	22.17	15.49
Bra005970.1-P	Field mustard	cytosol	10.83	14.83
Bra021467.1-P	Field mustard	nucleus	14.11	14.36
Bra009323.1-P	Field mustard	cytosol	13.1	13.72
Bra008671.1-P	Field mustard	nucleus	9.82	13.59
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	11.84	11.84

Protein Annotations

EnsemblPlants:Bra002559.1	EnsemblPlants:Bra002559.1-P	EnsemblPlantsGene:Bra002559	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002543B25	UniProt:M4CEC8	MapMan:35.1	:	:	:

Description

AT5G59550 (E=5e-132) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:-:8879460..8880653

Molecular Weight (calculated)

42911.9 Da

IEP (calculated)

6.090

GRAVY (calculated)

-0.535

Length

397 amino acids

Sequence
(BLAST)

001: MPSSSPSPST TITTPPATAS YWCYSCTRFV SVWSESEQGS VACPHCDGGF IEEVTDSSSA AVELATPPPT EVRSIDSTRR SVIRRRRSSR RPSFNPVIVL
101: QGGAGERDDS EEGDRRAFEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG AGIGRSGNPP ASKSAIESLP RVEISDCHIS SEANCAVCTE
201: VFEAETEARE MPCKHIFHDD CITPWLSIRN SCPVCRFELP SEPNRRSSSN NEEGDNAVGM TIWRLPGGGF AVGRFNAAMG EGERVLPVVL TEMDGGGIGS
301: GNSEGPRRIS WVRAQGTVES DSSNGGASGS GGRLRRMVRG MVSLMRRVRP NRGSNSSSSN RVNLDIGVEP RGLERSSSVM RRYFGRNRSN RDSSVLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.