Factsheet for Bra023539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85531	Canola	cytosol	82.37	95.34
AT5G15820.1	Thale cress	cytosol	42.82	48.85
Os06t0633500-01	Rice	cytosol, nucleus	12.34	39.52
Bra008671.1-P	Field mustard	nucleus	25.44	35.19
Bra021467.1-P	Field mustard	nucleus	34.26	34.87
KRH18313	Soybean	nucleus	22.67	24.06
VIT_14s0083g00710.t01	Wine grape	nucleus	23.68	24.04
Bra001767.1-P	Field mustard	nucleus	12.85	23.83
KRG93748	Soybean	nucleus, plastid	22.17	23.16
PGSC0003DMT400068309	Potato	cytosol	23.17	23.12
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	22.92	22.92
Solyc02g089410.2.1	Tomato	nucleus	18.39	22.32
PGSC0003DMT400003515	Potato	nucleus	20.65	22.1
Bra014684.1-P	Field mustard	nucleus	10.58	21.88
Bra005970.1-P	Field mustard	cytosol	14.86	20.34
Bra030136.1-P	Field mustard	cytosol	12.34	20.25
GSMUA_Achr8P24510_001	Banana	cytosol	19.14	19.19
EER90075	Sorghum	nucleus	14.61	19.14
Zm00001d046663_P001	Maize	cytosol	14.11	18.79
Os02t0727700-01	Rice	cytosol, nucleus, plastid	14.61	18.65
Bra004589.1-P	Field mustard	nucleus	11.08	18.03
TraesCS6B01G318600.1	Wheat	cytosol, plastid	13.85	17.92
TraesCS6A01G288800.1	Wheat	cytosol, plastid	13.85	17.92
TraesCS7D01G246300.1	Wheat	plastid	12.09	17.84
TraesCS7D01G387300.1	Wheat	cytosol	14.61	17.79
Os08t0487500-01	Rice	plastid	12.09	17.71
Bra009323.1-P	Field mustard	cytosol	16.88	17.68
Zm00001d051736_P001	Maize	cytosol	14.61	17.58
TraesCS7B01G144100.1	Wheat	plastid	11.84	17.47
TraesCS7B01G293600.1	Wheat	cytosol	14.36	17.27
Bra013006.1-P	Field mustard	nucleus	18.14	17.27
TraesCS7A01G391700.1	Wheat	cytosol	14.36	17.22
Bra037800.1-P	Field mustard	cytosol	13.1	17.22
OQU85475	Sorghum	cytosol	13.85	17.19
TraesCS7A01G247700.1	Wheat	cytosol, plastid	11.59	17.1
Zm00001d031273_P001	Maize	cytosol, plastid	12.09	16.61
Zm00001d053704_P001	Maize	cytosol	14.86	16.57
GSMUA_Achr3P06300_001	Banana	cytosol	21.16	16.09
Bra038246.1-P	Field mustard	nucleus	13.1	16.0
Bra007253.1-P	Field mustard	mitochondrion, nucleus	12.34	15.81
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	15.11	15.5
EES14331	Sorghum	plastid	11.34	15.36
Bra035835.1-P	Field mustard	nucleus	12.59	15.29
HORVU7Hr1G092570.1	Barley	cytosol	14.61	15.14
Bra000207.1-P	Field mustard	mitochondrion, nucleus	12.09	15.14
Bra019109.1-P	Field mustard	nucleus	12.09	14.91
HORVU6Hr1G072430.1	Barley	cytosol	13.6	14.84
Bra027436.1-P	Field mustard	nucleus	11.08	14.24
Bra011215.1-P	Field mustard	cytosol	8.31	14.22
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.34	13.85
Bra002823.1-P	Field mustard	nucleus	12.09	13.64
TraesCS6D01G160300.1	Wheat	nucleus	11.84	13.51
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	12.09	12.97
Bra026444.1-P	Field mustard	nucleus	12.09	12.94
Bra005020.1-P	Field mustard	nucleus, plastid	11.08	12.9
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.09	12.87
Bra037999.1-P	Field mustard	nucleus	9.32	12.76
Bra014266.1-P	Field mustard	nucleus	14.11	12.7
Bra030854.1-P	Field mustard	nucleus	9.82	12.5
Bra020313.1-P	Field mustard	plastid	12.09	12.34
Bra006709.1-P	Field mustard	plastid	12.09	12.21
Os02t0191500-01	Rice	nucleus	11.34	12.0
TraesCS6B01G198800.1	Wheat	nucleus	12.09	11.97
Bra002559.1-P	Field mustard	plastid	11.84	11.84
Bra000143.1-P	Field mustard	nucleus	11.08	11.73
Bra037109.1-P	Field mustard	nucleus	9.82	11.68
Bra028935.1-P	Field mustard	nucleus	12.34	8.63

Protein Annotations

EnsemblPlants:Bra023539.1	EnsemblPlants:Bra023539.1-P	EnsemblPlantsGene:Bra023539	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025436BF	UniProt:M4E436	MapMan:35.1	:

Description

AT5G15820 (E=3e-040) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:3841096..3842289

Molecular Weight (calculated)

44201.4 Da

IEP (calculated)

4.149

GRAVY (calculated)

-0.449

Length

397 amino acids

Sequence
(BLAST)

001: MAKLFGYPIN VKAEEEDDDG GSSIAAEFYR SGNQPDYEAI RETNPYIRFL ESISDPGSVS MESEPDRHHS FIDFFGRESY VGSNQRLSTS RAFDIWGIQD
101: MEEEEVELGL RIGSGSGSDH SGELGLQVTR SFEIDTRMIE IGSSRVEIGS GRVEIGSGRV EINTGRVGNN TGRVEIGTGL VEIGTGLVEI GTGLVEIGTG
201: IAFVGDDILV GHVEPQNEIT WVVPEPVEPQ EEVGGVSLSQ EPMEEYNQEW HGGLFDGFFE ESVDLVMEDF FDTLFPDIDV YAANNRDYED VIARTFHESG
301: TKGSPPASKR MVDELPDVGI TSEELSIGCA ICKDEIVVEE KVKRLPCRHY YHKECIVPWL GIRNTCPVCR YELPTDDLEY ERNKRSRRGL GRDLMSE

Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)

001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA

Arabidopsis Description

AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.