Factsheet for PGSC0003DMT400003515

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089410.2.1	Tomato	nucleus	79.25	89.91
PGSC0003DMT400068309	Potato	cytosol	48.79	45.48
Os06t0633500-01	Rice	cytosol, nucleus	12.67	37.9
VIT_14s0083g00710.t01	Wine grape	nucleus	38.54	36.57
KRH18313	Soybean	nucleus	34.77	34.49
KRG93748	Soybean	nucleus, plastid	33.96	33.16
GSMUA_Achr8P24510_001	Banana	cytosol	31.54	29.55
CDY34722	Canola	cytosol	27.49	26.15
AT3G02340.2	Thale cress	cytosol	28.57	25.92
CDY34721	Canola	cytosol	27.22	25.9
Bra021467.1-P	Field mustard	nucleus	26.42	25.13
PGSC0003DMT400063293	Potato	nucleus	28.57	24.54
TraesCS6B01G318600.1	Wheat	cytosol, plastid	20.22	24.43
GSMUA_Achr3P06300_001	Banana	cytosol	33.42	23.75
OQU85475	Sorghum	cytosol	20.49	23.75
CDX69496	Canola	cytosol	18.33	23.61
TraesCS6A01G288800.1	Wheat	cytosol, plastid	19.41	23.45
Bra008671.1-P	Field mustard	nucleus	18.06	23.34
AT5G15820.1	Thale cress	cytosol	21.83	23.28
Os02t0727700-01	Rice	cytosol, nucleus, plastid	19.14	22.83
Zm00001d051736_P001	Maize	cytosol	20.22	22.73
Os08t0487500-01	Rice	plastid	16.44	22.51
CDX85531	Canola	cytosol	20.49	22.16
TraesCS7B01G144100.1	Wheat	plastid	15.9	21.93
TraesCS7A01G247700.1	Wheat	cytosol, plastid	15.9	21.93
CDY26465	Canola	cytosol	19.95	21.83
CDX90972	Canola	cytosol	19.68	21.79
TraesCS7D01G246300.1	Wheat	plastid	15.63	21.56
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	22.1	20.65
Zm00001d031273_P001	Maize	cytosol, plastid	15.63	20.07
EES14331	Sorghum	plastid	15.63	19.8
HORVU6Hr1G072430.1	Barley	cytosol	19.14	19.51
Zm00001d046663_P001	Maize	cytosol	15.63	19.46
EER90075	Sorghum	nucleus	14.82	18.15
TraesCS7D01G387300.1	Wheat	cytosol	15.9	18.1
TraesCS7B01G293600.1	Wheat	cytosol	15.63	17.58
TraesCS7A01G391700.1	Wheat	cytosol	15.63	17.52
PGSC0003DMT400081469	Potato	nucleus	17.79	17.46
PGSC0003DMT400079301	Potato	nucleus	13.48	16.67
TraesCS6D01G160300.1	Wheat	nucleus	15.09	16.09
Zm00001d053704_P001	Maize	cytosol	15.36	16.01
HORVU7Hr1G092570.1	Barley	cytosol	16.44	15.93
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	16.17	15.5
Os02t0191500-01	Rice	nucleus	15.09	14.93
PGSC0003DMT400069320	Potato	nucleus	16.17	14.93
PGSC0003DMT400082489	Potato	nucleus	12.94	14.91
PGSC0003DMT400061055	Potato	extracellular	11.86	14.77
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	14.56	14.59
PGSC0003DMT400058464	Potato	nucleus	12.4	14.47
TraesCS6B01G198800.1	Wheat	nucleus	15.63	14.46
PGSC0003DMT400026380	Potato	nucleus	14.29	13.7
PGSC0003DMT400005512	Potato	mitochondrion	13.75	13.21
PGSC0003DMT400016233	Potato	nucleus	14.02	13.2
PGSC0003DMT400046527	Potato	nucleus	12.4	12.78
PGSC0003DMT400071362	Potato	nucleus	14.82	11.63
PGSC0003DMT400002370	Potato	cytosol	9.7	11.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400003515	EnsemblPlantsGene:PGSC0003DMG400001386	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	PGSC:PGSC0003DMG400001386	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296CE89	UniProt:M0ZLT7	MapMan:35.1	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001386]

Coordinates

chr2:-:45168987..45170399

Molecular Weight (calculated)

41655.2 Da

IEP (calculated)

3.869

GRAVY (calculated)

-0.549

Length

371 amino acids

Sequence
(BLAST)

001: MAENYSLQSS HIQTTNFSEN EVEQEDPSYS FSPSNLTFFI PSFDDFDSGP ESVDSESDRS DLIANPTSFF YGNEDQMDLV TDLFDSRNDY VTDHPRVVHS
101: NSNVRVLPDG EEVELEFEFD GLRVVGVDSE SDSEDVEVIS GVIHQIGDSR VPDLWSCFRV GDEGDLDEDS EWEEVERVEG RRDNMSYLIG RMEEISVSSD
201: FSSEEGNLGL GEDGEAGQVR NLEWEFLVAV NDLERSLEFH NAVILQDDGG FGTFDFVGSQ ERLKGSPPAA KSVLENLPLV VVSDEDLKGS NAACAVCKDE
301: ILSTEKVTRL PCSHYYHCDC ILPWLNIRNT CPVCRHEFPT DDADYERENG RSAGPGHVND FQVRYNFEPV L

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.