Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 47.99 | 38.47 |
| Bra014266.1-P | Field mustard | nucleus | 35.73 | 38.32 |
| CDY58938 | Canola | nucleus | 35.52 | 38.1 |
| CDY03622 | Canola | nucleus | 35.31 | 37.44 |
| AT5G01980.1 | Thale cress | nucleus | 37.42 | 35.9 |
| KRH40635 | Soybean | nucleus, plastid | 41.23 | 35.39 |
| KRH00522 | Soybean | plastid | 41.01 | 34.7 |
| CDY01221 | Canola | cytosol | 15.22 | 33.03 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 28.12 | 32.13 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 32.35 | 30.12 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 31.92 | 29.61 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 31.92 | 29.61 |
| Os11t0119200-01 | Rice | nucleus | 30.02 | 28.92 |
| Os12t0118700-01 | Rice | nucleus | 30.44 | 28.86 |
| GSMUA_Achr11P... | Banana | cytosol | 34.88 | 22.76 |
| PGSC0003DMT400082489 | Potato | nucleus | 13.74 | 20.19 |
| PGSC0003DMT400079301 | Potato | nucleus | 12.47 | 19.67 |
| PGSC0003DMT400026380 | Potato | nucleus | 16.07 | 19.64 |
| PGSC0003DMT400058464 | Potato | nucleus | 13.11 | 19.5 |
| PGSC0003DMT400061055 | Potato | extracellular | 12.26 | 19.46 |
| PGSC0003DMT400081469 | Potato | nucleus | 15.22 | 19.05 |
| PGSC0003DMT400016233 | Potato | nucleus | 15.64 | 18.78 |
| PGSC0003DMT400002370 | Potato | cytosol | 12.47 | 18.27 |
| PGSC0003DMT400069320 | Potato | nucleus | 15.01 | 17.66 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 13.74 | 16.84 |
| PGSC0003DMT400068309 | Potato | cytosol | 14.16 | 16.83 |
| PGSC0003DMT400046527 | Potato | nucleus | 12.05 | 15.83 |
| PGSC0003DMT400003515 | Potato | nucleus | 11.63 | 14.82 |
| PGSC0003DMT400063293 | Potato | nucleus | 13.11 | 14.35 |
Protein Annotations
| EntrezGene:102583271 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1CNL9 |
| PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400027763 | PGSC:PGSC0003DMG400027763 | EnsemblPlants:PGSC0003DMT400071362 | PFscan:PS50089 | PANTHER:PTHR44679 |
| PANTHER:PTHR44679:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294C190 | RefSeq:XP_006344609.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027763]
Coordinates
chr9:+:39306329..39308008
Molecular Weight (calculated)
52911.5 Da
IEP (calculated)
4.431
GRAVY (calculated)
-0.597
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MDANSHSVSP ELSLLGHMTN NLAIAQTGFS PSCALCHRWF ISDNDAADFE AINICGDCKF LLLEDLGTPM RDYQRLYTSS RTTPSESRRW RRVHSDAEGD
101: GVDSLFGETE SNVTISGYRN FNSEIDSISY GGNSDASVDG NSYLDNDHSS HSDEGSDFET DTDIDPMHAG IYNWNSDNEW EEVDTDALHS VGARAQLPRS
201: LHLNPGNWQG QFLSSEYLGT VHFRIPEGSQ RLVTDHSHEL EQFQQTDATD YLDATTFEEH LAETDGLRRG APPTAVSVLN DLPCLVVKED HEQLDSLSCA
301: ICKDSLFVGT VVNQLPCSHL YHPSCIFPWL ASRNSCPLCR YELPTDDLDY EHRKQRASNL VIHRNPQHEI NEDGSPDSSD SENDEFGYSR TESGQVIHNE
401: AVNQQSSSEG ARGRWFLAAA APVVGVLLMF WLGNPLMERS LSLPIFCSQG RRTNQPLPSQ QVNNNGRRWW SLF
101: GVDSLFGETE SNVTISGYRN FNSEIDSISY GGNSDASVDG NSYLDNDHSS HSDEGSDFET DTDIDPMHAG IYNWNSDNEW EEVDTDALHS VGARAQLPRS
201: LHLNPGNWQG QFLSSEYLGT VHFRIPEGSQ RLVTDHSHEL EQFQQTDATD YLDATTFEEH LAETDGLRRG APPTAVSVLN DLPCLVVKED HEQLDSLSCA
301: ICKDSLFVGT VVNQLPCSHL YHPSCIFPWL ASRNSCPLCR YELPTDDLDY EHRKQRASNL VIHRNPQHEI NEDGSPDSSD SENDEFGYSR TESGQVIHNE
401: AVNQQSSSEG ARGRWFLAAA APVVGVLLMF WLGNPLMERS LSLPIFCSQG RRTNQPLPSQ QVNNNGRRWW SLF
001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
Arabidopsis Description
At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.