Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03622 | Canola | nucleus | 69.37 | 76.68 |
| Bra014266.1-P | Field mustard | nucleus | 67.55 | 75.51 |
| CDY58938 | Canola | nucleus | 67.34 | 75.28 |
| CDY01221 | Canola | cytosol | 31.03 | 70.18 |
| KRH40635 | Soybean | nucleus, plastid | 47.87 | 42.83 |
| KRH00522 | Soybean | plastid | 47.67 | 42.04 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 48.48 | 40.51 |
| PGSC0003DMT400071362 | Potato | nucleus | 35.9 | 37.42 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 31.24 | 37.2 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 34.69 | 33.66 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 34.48 | 33.33 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 34.48 | 33.33 |
| Os11t0119200-01 | Rice | nucleus | 32.05 | 32.18 |
| Os12t0118700-01 | Rice | nucleus | 31.85 | 31.46 |
| GSMUA_Achr11P... | Banana | cytosol | 34.89 | 23.72 |
| AT2G40830.4 | Thale cress | mitochondrion | 15.42 | 23.17 |
| AT3G56580.1 | Thale cress | mitochondrion | 14.6 | 22.5 |
| AT2G39720.2 | Thale cress | nucleus | 17.04 | 20.95 |
| AT3G13430.2 | Thale cress | nucleus | 13.18 | 20.63 |
| AT4G26400.1 | Thale cress | nucleus | 14.81 | 20.51 |
| AT5G64920.1 | Thale cress | cytosol | 13.79 | 20.36 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 16.23 | 20.25 |
| AT1G60360.1 | Thale cress | nucleus | 13.39 | 20.18 |
| AT3G19950.2 | Thale cress | cytosol | 15.62 | 19.95 |
| AT5G56340.1 | Thale cress | nucleus | 15.82 | 19.7 |
| AT1G55530.2 | Thale cress | nucleus | 14.0 | 19.66 |
| AT5G15820.1 | Thale cress | cytosol | 11.76 | 16.67 |
| AT5G08139.1 | Thale cress | cytosol | 12.58 | 16.49 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 16.23 | 15.62 |
| AT3G02340.2 | Thale cress | cytosol | 12.37 | 14.91 |
| AT5G60820.1 | Thale cress | cytosol | 11.56 | 13.6 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:831911 | ProteinID:AED90416.1 | ArrayExpress:AT5G01980 | EnsemblPlantsGene:AT5G01980 |
| RefSeq:AT5G01980 | TAIR:AT5G01980 | RefSeq:AT5G01980-TAIR-G | EnsemblPlants:AT5G01980.1 | TAIR:AT5G01980.1 | EMBL:BT021990 |
| EMBL:BT029027 | ProteinID:CAB82971.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_195818.1 | PFAM:PF13639 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR44679 | UniProt:Q9LZN3 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI00000A87C8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
Coordinates
chr5:+:375208..377603
Molecular Weight (calculated)
55543.9 Da
IEP (calculated)
4.759
GRAVY (calculated)
-0.651
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.