Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43991 | Canola | nucleus | 71.43 | 72.82 |
| Bra027436.1-P | Field mustard | nucleus | 71.43 | 72.82 |
| AT1G55530.2 | Thale cress | nucleus | 58.73 | 52.71 |
| GSMUA_Achr11P... | Banana | nucleus | 35.56 | 41.48 |
| AT5G56340.1 | Thale cress | nucleus | 51.43 | 40.91 |
| CDY23599 | Canola | golgi, mitochondrion | 71.75 | 37.11 |
| AT4G26400.1 | Thale cress | nucleus | 41.9 | 37.08 |
| Zm00001d010635_P001 | Maize | nucleus | 35.87 | 36.22 |
| Os03t0812200-01 | Rice | nucleus | 42.22 | 36.04 |
| Os05t0488800-01 | Rice | nucleus | 36.51 | 35.6 |
| Zm00001d038528_P001 | Maize | cytosol | 37.46 | 35.44 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 36.51 | 34.64 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 36.19 | 34.34 |
| Zm00001d013005_P002 | Maize | nucleus | 40.32 | 34.23 |
| KXG37275 | Sorghum | nucleus | 40.63 | 33.42 |
| KXG22238 | Sorghum | plastid | 39.05 | 31.62 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 39.37 | 31.16 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 39.68 | 31.09 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 39.68 | 30.94 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 39.68 | 30.94 |
| HORVU1Hr1G068950.2 | Barley | golgi | 36.51 | 29.79 |
| AT2G40830.4 | Thale cress | mitochondrion | 25.08 | 24.09 |
| AT3G56580.1 | Thale cress | mitochondrion | 23.17 | 22.81 |
| AT5G64920.1 | Thale cress | cytosol | 22.86 | 21.56 |
| AT3G19950.2 | Thale cress | cytosol | 25.4 | 20.73 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 24.76 | 19.75 |
| AT1G60360.1 | Thale cress | nucleus | 20.32 | 19.57 |
| AT2G39720.2 | Thale cress | nucleus | 22.54 | 17.71 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 23.49 | 14.45 |
| AT5G08139.1 | Thale cress | cytosol | 17.14 | 14.36 |
| AT5G01980.1 | Thale cress | nucleus | 20.63 | 13.18 |
| AT5G15820.1 | Thale cress | cytosol | 13.33 | 12.07 |
| AT5G60820.1 | Thale cress | cytosol | 15.87 | 11.93 |
| AT3G02340.2 | Thale cress | cytosol | 13.33 | 10.27 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:820543 | UniProt:A0A178V4U4 | ProteinID:AEE75347.1 | ProteinID:AEE75348.1 |
| ProteinID:AEE75349.1 | ProteinID:ANM64126.1 | ArrayExpress:AT3G13430 | EnsemblPlantsGene:AT3G13430 | RefSeq:AT3G13430 | TAIR:AT3G13430 |
| RefSeq:AT3G13430-TAIR-G | EnsemblPlants:AT3G13430.2 | TAIR:AT3G13430.2 | Unigene:At.43471 | ProteinID:BAB01747.1 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001030687.1 | RefSeq:NP_001189879.1 | RefSeq:NP_001326174.1 | RefSeq:NP_187951.1 |
| ProteinID:OAP01257.1 | PFAM:PF13639 | PFAM:PF14369 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | UniProt:Q9LJE9 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000A6676 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
Coordinates
chr3:+:4367192..4369029
Molecular Weight (calculated)
35238.1 Da
IEP (calculated)
3.882
GRAVY (calculated)
-0.721
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.