Factsheet for Os05t0488800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G305300.1	Wheat	nucleus	77.4	75.3
TraesCS1B01G316300.1	Wheat	nucleus	76.78	74.7
Zm00001d010635_P001	Maize	nucleus	67.18	69.55
Zm00001d038528_P001	Maize	cytosol	70.9	68.77
HORVU1Hr1G068950.2	Barley	golgi	78.64	65.8
KXG22238	Sorghum	plastid	77.4	64.27
GSMUA_Achr11P...	Banana	nucleus	35.91	42.96
CDY46577	Canola	nucleus	37.15	41.24
CDY10554	Canola	cytosol	37.46	39.67
CDY26096	Canola	nucleus	35.29	38.78
Os03t0812200-01	Rice	nucleus	43.65	38.21
Bra027436.1-P	Field mustard	nucleus	36.22	37.86
CDY43991	Canola	nucleus	36.22	37.86
KRG97316	Soybean	nucleus	39.63	37.21
CDY56022	Canola	nucleus	35.91	37.06
CDY56080	Canola	cytosol	32.51	36.97
AT3G13430.2	Thale cress	nucleus	35.6	36.51
VIT_06s0004g00120.t01	Wine grape	nucleus	41.49	36.41
Bra037109.1-P	Field mustard	nucleus	37.46	36.23
Bra030854.1-P	Field mustard	nucleus	34.98	36.22
AT1G55530.2	Thale cress	nucleus	39.32	36.18
CDY08249	Canola	cytosol	37.46	36.12
CDY32791	Canola	nucleus	37.77	34.66
Bra002823.1-P	Field mustard	nucleus	37.77	34.66
AT5G56340.1	Thale cress	nucleus	42.11	34.34
PGSC0003DMT400046527	Potato	nucleus	37.77	33.89
CDX92768	Canola	nucleus	31.89	33.33
CDY50031	Canola	cytosol	29.41	32.76
Bra037999.1-P	Field mustard	nucleus	29.41	32.76
CDX89343	Canola	cytosol, mitochondrion	35.29	32.39
CDY28208	Canola	cytosol	23.22	32.33
Bra011215.1-P	Field mustard	cytosol	23.22	32.33
AT4G26400.1	Thale cress	nucleus	35.6	32.3
Bra026444.1-P	Field mustard	nucleus	36.84	32.08
CDY42740	Canola	nucleus	31.89	31.99
Os03t0324900-01	Rice	cytosol	31.58	31.88
CDX92770	Canola	nucleus	31.89	31.79
Bra019109.1-P	Field mustard	nucleus	31.58	31.68
Os06t0633500-01	Rice	cytosol, nucleus	12.07	31.45
CDY56081	Canola	nucleus	23.22	31.38
Solyc01g050040.2.1	Tomato	nucleus	27.55	30.48
CDX94342	Canola	mitochondrion, nucleus	35.29	29.46
KRH70139	Soybean	nucleus	26.93	27.27
Os01t0276600-01	Rice	nucleus	27.24	26.75
Os03t0351800-01	Rice	nucleus	23.22	26.5
KRH08483	Soybean	cytosol, nucleus, plastid	26.01	26.09
Os06t0101300-01	Rice	nucleus	26.32	25.15
Os03t0271600-01	Rice	plastid	20.12	23.3
Bra028935.1-P	Field mustard	nucleus	40.56	23.06
Os05t0495000-00	Rice	mitochondrion	19.81	22.38
Os01t0802000-01	Rice	nucleus	21.05	20.67
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	23.53	20.54
CDY11934	Canola	nucleus	39.94	19.79
CDY23599	Canola	golgi, mitochondrion	36.22	19.21
Os08t0487500-01	Rice	plastid	15.79	18.82
Os02t0727700-01	Rice	cytosol, nucleus, plastid	17.96	18.65
Os05t0110000-01	Rice	mitochondrion	19.2	18.62
Os02t0767600-00	Rice	mitochondrion	18.89	18.6
Os01t0972000-01	Rice	nucleus	16.41	15.87
Os12t0118700-01	Rice	nucleus	20.74	13.43
Os02t0191500-01	Rice	nucleus	15.48	13.33
Os11t0119200-01	Rice	nucleus	20.12	13.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4339152	ProteinID:AAT77283.1	EMBL:AK240640	ProteinID:BAF17801.2
ProteinID:BAS94636.1	ProteinID:EEE64176.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os05g0488800
EnsemblPlants:Os05t0488800-01	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF3
UniProt:Q6AVN2	InterPro:RPABC4/Spt4	SMART:SM00184	SUPFAM:SSF57850	SUPFAM:SSF63393	UniParc:UPI00003FE5E9
RefSeq:XP_015637458.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

salt-induced RING Finger Protein 1Salt-induced RING Finger Protein, Negative regulation of response to salt stress (Os05t0488800-01)

Coordinates

chr5:-:24023674..24026150

Molecular Weight (calculated)

35563.7 Da

IEP (calculated)

4.110

GRAVY (calculated)

-0.678

Length

323 amino acids

Sequence
(BLAST)

001: MAEAAITRYW CHECEQAIEE AMVDEIKCPS CGGGFVEEMT DEEIERLTNR QPEPGFSQWN PIEHPGETMD SDDEDNDLGR EFEGFIRRHR RASTLRRVLD
101: SIHDDLADDQ ERDSSILINA FNQALALQGS VLDPDEGQGD QGGSTNDDGL LEEYVLGAGL SLLLQHLAES DPSRNGTPPA KKEAVEALPT VKIEEVVSCS
201: VCLDDLEVGS QAKQMPCEHK FHSSCILPWL ELHSSCPVCR FELPSEETKD LNEPSNIGRV EDSHEEVRAD GPGNVSESSN RPWAIVPWLN ELFSTREAQN
301: AGGVSTDQQS PHTSGTNPNA GHS

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.