CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011215.1-P	Field mustard	cytosol	100.0	100.0
CDY56081	Canola	nucleus	58.19	56.49
CDY50031	Canola	cytosol	69.4	55.52
CDY56080	Canola	cytosol	62.5	51.06
CDY08249	Canola	cytosol	47.41	32.84
CDY56022	Canola	nucleus	42.67	31.63
CDY10554	Canola	cytosol	40.95	31.15
CDY43991	Canola	nucleus	39.22	29.45
CDY26096	Canola	nucleus	37.07	29.25
AT1G55530.2	Thale cress	nucleus	43.53	28.77
CDY46577	Canola	nucleus	34.91	27.84
CDY32791	Canola	nucleus	37.07	24.43
CDX82271	Canola	cytosol	22.41	24.41
Os03t0812200-01	Rice	nucleus	37.93	23.85
Zm00001d010635_P001	Maize	nucleus	31.9	23.72
CDX92768	Canola	nucleus	31.47	23.62
CDY36069	Canola	cytosol	21.98	23.5
CDY72364	Canola	cytosol	22.41	23.42
Os05t0488800-01	Rice	nucleus	32.33	23.22
Zm00001d013005_P002	Maize	nucleus	36.64	22.91
KXG37275	Sorghum	nucleus	37.5	22.72
CDX92770	Canola	nucleus	31.47	22.53
CDY42740	Canola	nucleus	31.03	22.36
HORVU5Hr1G111530.1	Barley	nucleus	37.07	21.61
GSMUA_Achr11P...	Banana	nucleus	25.0	21.48
TraesCS5B01G480100.1	Wheat	nucleus	37.07	21.39
TraesCS1D01G305300.1	Wheat	nucleus	30.6	21.39
TraesCS1B01G316300.1	Wheat	nucleus	30.6	21.39
TraesCS5D01G480800.1	Wheat	nucleus	37.07	21.29
TraesCS5A01G467700.1	Wheat	nucleus	36.64	21.04
CDX89343	Canola	cytosol, mitochondrion	31.47	20.74
Zm00001d038528_P001	Maize	cytosol	29.74	20.72
CDY32333	Canola	cytosol	20.69	20.43
CDY68603	Canola	cytosol	20.26	19.42
KXG22238	Sorghum	plastid	32.33	19.28
CDX94665	Canola	nucleus	19.4	19.15
CDX94342	Canola	mitochondrion, nucleus	31.9	19.12
HORVU1Hr1G068950.2	Barley	golgi	31.03	18.65
CDY25360	Canola	cytosol, nucleus, plastid	24.57	17.65
CDY24592	Canola	nucleus	24.14	17.45
CDX75998	Canola	nucleus	14.22	17.19
CDY33437	Canola	cytosol	23.71	16.98
CDX81263	Canola	cytosol, peroxisome, plastid	20.69	16.55
CDY18690	Canola	cytosol, peroxisome, plastid	20.69	16.05
CDY22790	Canola	nucleus	18.53	15.93
CDY23878	Canola	mitochondrion, nucleus	20.69	15.74
CDY22483	Canola	mitochondrion	20.26	15.51
CDY35437	Canola	mitochondrion, nucleus	21.12	15.46
CDY23599	Canola	golgi, mitochondrion	38.36	14.61
CDY53450	Canola	cytosol	20.26	14.6
CDX79968	Canola	mitochondrion, nucleus	18.53	14.48
CDY42507	Canola	cytosol	21.12	14.45
CDY11934	Canola	nucleus	39.66	14.11
CDY61251	Canola	cytosol	21.55	13.85
CDY27204	Canola	mitochondrion, nucleus	18.53	13.78
CDX74533	Canola	cytosol	17.24	13.7
CDX72127	Canola	mitochondrion	18.53	13.61
CDX80258	Canola	plastid	20.69	13.52
CDX88709	Canola	cytosol, plastid	22.41	13.2
CDX94901	Canola	cytosol	17.67	13.06
CDY20473	Canola	nucleus, plastid	17.67	12.28
CDY21513	Canola	cytosol	18.53	12.08
CDY01669	Canola	plastid	16.81	12.07
CDX74839	Canola	cytosol, plastid	16.81	12.04
CDY07641	Canola	nucleus	19.4	12.03
CDY69134	Canola	cytosol	15.09	12.03
CDX78323	Canola	cytosol	14.66	11.81
CDY24951	Canola	nucleus	18.97	11.73
CDX69973	Canola	cytosol	18.1	11.67
CDX99105	Canola	cytosol, plastid	15.95	11.42
CDY33046	Canola	plastid	16.38	11.11
CDY48679	Canola	cytosol, plastid	15.95	11.08
CDY58938	Canola	nucleus	18.97	9.98
CDX90972	Canola	cytosol	13.79	9.55
CDY03622	Canola	nucleus	18.1	9.42
CDX69496	Canola	cytosol	11.64	9.38
CDX85531	Canola	cytosol	13.79	9.33
CDY02194	Canola	peroxisome	15.95	9.3
CDY26465	Canola	cytosol	13.36	9.14
CDY51628	Canola	peroxisome	15.95	9.11
CDY34721	Canola	cytosol	15.09	8.97
CDY34722	Canola	cytosol	15.09	8.97
CDY01221	Canola	cytosol	8.19	8.72

Protein Annotations

EnsemblPlants:CDY28208	EnsemblPlantsGene:GSBRNA2T00039933001	Gene3D:3.30.40.10	GO:A0A078GU74	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13923	PFscan:PS50089
ProteinID:CDY28208	ProteinID:CDY28208.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002546D8A
UniProt:A0A078GU74	MapMan:35.2	:	:	:	:

Description

BnaA01g06410DBnaA01g06410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU74]

Coordinates

chrLK032216:-:273807..274835

Molecular Weight (calculated)

25715.2 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.515

Length

232 amino acids

Sequence
(BLAST)

001: MDEEENNAYR PIDSVLAPRF IQMMKNSARN GTTDMDSQLQ EILRRRGRRP VSIEQLLQGI RTGLTLAPAD DDTNNARDDD AGRERGRVIV TNPFNQIVAV
101: PSSAVSDTLR PVAGSLSEYF IGPEFEALRY GTPPARRDAV EALADDLLVL NPGIQCLVCL DYIEMNTTGK QMPCQHKFHS YCLLYWLQLH SSCPVCRCQL
201: RTAKDEADGG SFSSSSQGSE NNDQEEEGPM AA

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.