Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY06478 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | CDY06478 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78323 | Canola | cytosol | 91.41 | 92.36 |
| CDY21513 | Canola | cytosol | 67.01 | 54.78 |
| CDX69973 | Canola | cytosol | 65.64 | 53.06 |
| AT5G08139.1 | Thale cress | cytosol | 64.26 | 49.73 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 14.78 | 34.68 |
| CDY02194 | Canola | peroxisome | 47.42 | 34.67 |
| CDY51628 | Canola | peroxisome | 47.08 | 33.74 |
| KRH03189 | Soybean | nucleus | 33.33 | 27.32 |
| KRH56750 | Soybean | cytosol | 31.96 | 27.19 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 34.71 | 23.01 |
| CDX82271 | Canola | cytosol | 16.49 | 22.54 |
| CDY72364 | Canola | cytosol | 16.84 | 22.07 |
| CDY36069 | Canola | cytosol | 15.81 | 21.2 |
| PGSC0003DMT400063293 | Potato | nucleus | 30.93 | 20.83 |
| CDX69496 | Canola | cytosol | 20.27 | 20.49 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 27.49 | 20.2 |
| CDX94665 | Canola | nucleus | 16.15 | 20.0 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 20.96 | 19.87 |
| CDY68603 | Canola | cytosol | 16.49 | 19.83 |
| CDX75998 | Canola | nucleus | 13.06 | 19.79 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 19.59 | 19.66 |
| CDY26465 | Canola | cytosol | 22.68 | 19.47 |
| Os08t0487500-01 | Rice | plastid | 17.87 | 19.19 |
| CDY32333 | Canola | cytosol | 15.46 | 19.15 |
| Solyc03g114680.2.1 | Tomato | nucleus | 32.3 | 18.88 |
| OQU85475 | Sorghum | cytosol | 20.62 | 18.75 |
| TraesCS7D01G246300.1 | Wheat | plastid | 17.18 | 18.59 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 18.9 | 18.39 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 19.59 | 18.33 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 19.24 | 18.24 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 16.84 | 18.22 |
| Zm00001d051736_P001 | Maize | cytosol | 20.62 | 18.18 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 17.87 | 17.99 |
| CDY34722 | Canola | cytosol | 24.05 | 17.95 |
| EES14331 | Sorghum | plastid | 17.87 | 17.75 |
| CDX85531 | Canola | cytosol | 20.62 | 17.49 |
| TraesCS7B01G144100.1 | Wheat | plastid | 16.15 | 17.47 |
| Zm00001d046663_P001 | Maize | cytosol | 17.87 | 17.45 |
| CDY22790 | Canola | nucleus | 16.15 | 17.41 |
| CDY34721 | Canola | cytosol | 23.02 | 17.18 |
| EER90075 | Sorghum | nucleus | 17.87 | 17.16 |
| CDY22483 | Canola | mitochondrion | 17.53 | 16.83 |
| CDX90972 | Canola | cytosol | 19.24 | 16.72 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 20.27 | 16.21 |
| CDX79968 | Canola | mitochondrion, nucleus | 16.49 | 16.16 |
| CDY35437 | Canola | mitochondrion, nucleus | 17.53 | 16.09 |
| CDY23878 | Canola | mitochondrion, nucleus | 16.49 | 15.74 |
| CDY24592 | Canola | nucleus | 17.18 | 15.58 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 17.18 | 15.48 |
| CDY33437 | Canola | cytosol | 17.18 | 15.43 |
| CDY27204 | Canola | mitochondrion, nucleus | 16.49 | 15.38 |
| CDY46577 | Canola | nucleus | 15.12 | 15.12 |
| CDY28208 | Canola | cytosol | 12.03 | 15.09 |
| CDX92768 | Canola | nucleus | 15.81 | 14.89 |
| CDX72127 | Canola | mitochondrion | 16.15 | 14.87 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.49 | 14.72 |
| CDY01221 | Canola | cytosol | 11.0 | 14.68 |
| CDY20473 | Canola | nucleus, plastid | 16.84 | 14.67 |
| CDX94901 | Canola | cytosol | 15.81 | 14.65 |
| CDY56081 | Canola | nucleus | 12.03 | 14.64 |
| CDY42740 | Canola | nucleus | 16.15 | 14.6 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 16.49 | 14.55 |
| CDX92770 | Canola | nucleus | 16.15 | 14.51 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.49 | 14.5 |
| CDY32791 | Canola | nucleus | 17.53 | 14.49 |
| CDY42507 | Canola | cytosol | 16.84 | 14.45 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 17.18 | 14.37 |
| Zm00001d053704_P001 | Maize | cytosol | 17.53 | 14.33 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 25.43 | 14.18 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 17.87 | 14.05 |
| CDX99105 | Canola | cytosol, plastid | 15.46 | 13.89 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 18.21 | 13.7 |
| CDY26096 | Canola | nucleus | 13.75 | 13.61 |
| CDY61251 | Canola | cytosol | 16.84 | 13.57 |
| CDY56022 | Canola | nucleus | 14.43 | 13.42 |
| CDY07641 | Canola | nucleus | 17.18 | 13.37 |
| Os02t0191500-01 | Rice | nucleus | 17.18 | 13.33 |
| CDY24951 | Canola | nucleus | 17.18 | 13.33 |
| CDX74839 | Canola | cytosol, plastid | 14.78 | 13.27 |
| CDY43991 | Canola | nucleus | 14.09 | 13.27 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 17.53 | 12.72 |
| CDX80258 | Canola | plastid | 15.46 | 12.68 |
| CDX74533 | Canola | cytosol | 12.71 | 12.67 |
| CDY03622 | Canola | nucleus | 19.24 | 12.56 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 16.49 | 12.53 |
| CDY58938 | Canola | nucleus | 18.9 | 12.47 |
| CDY10554 | Canola | cytosol | 13.06 | 12.46 |
| CDY53450 | Canola | cytosol | 13.75 | 12.42 |
| CDX94342 | Canola | mitochondrion, nucleus | 16.49 | 12.4 |
| CDX89343 | Canola | cytosol, mitochondrion | 14.78 | 12.22 |
| CDY01669 | Canola | plastid | 13.4 | 12.07 |
| CDY50031 | Canola | cytosol | 12.03 | 12.07 |
| CDY48679 | Canola | cytosol, plastid | 13.75 | 11.98 |
| CDY56080 | Canola | cytosol | 11.68 | 11.97 |
| CDY08249 | Canola | cytosol | 13.75 | 11.94 |
| CDX88709 | Canola | cytosol, plastid | 16.15 | 11.93 |
| CDY33046 | Canola | plastid | 13.4 | 11.4 |
| CDY11934 | Canola | nucleus | 17.18 | 7.67 |
| CDY23599 | Canola | golgi, mitochondrion | 14.09 | 6.73 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078JQP7 |
| UniProt:A0A078JQP7 | EnsemblPlants:CDY69134 | ProteinID:CDY69134 | ProteinID:CDY69134.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00083476001 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 | SMART:SM00744 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE6C7A | InterPro:Znf_RING | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaAnng29400DBnaAnng29400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQP7]
Coordinates
chrLK038725:-:548..1663
Molecular Weight (calculated)
32399.0 Da
IEP (calculated)
3.828
GRAVY (calculated)
-0.484
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSHQPQVT LPHDNEVTES LGAVMELESE SGSCFIENID HDSDSDVNNL CDFAESDDDS GIEFRDVRLV TVESGSDDDP EDEREIWGID LNESDVDDDD
101: DVSVTIHSLE VEDLGGAAVE LDWEEVDGGA DVSPMFSLGD LARDERRDGS GNLEWQVLMN AHTLEINFDA ENRELYIVGG DQYDLLFEQF AQAGITNLRF
201: PPASEAFVKN LPVVVQVGVE NDDCAVCKDE MGIGSKGVVL LLPCNHKYHG ECIVPWLKTR NTCPVCRYEL PTDDVDYERR KSHIRTSRDA I
101: DVSVTIHSLE VEDLGGAAVE LDWEEVDGGA DVSPMFSLGD LARDERRDGS GNLEWQVLMN AHTLEINFDA ENRELYIVGG DQYDLLFEQF AQAGITNLRF
201: PPASEAFVKN LPVVVQVGVE NDDCAVCKDE MGIGSKGVVL LLPCNHKYHG ECIVPWLKTR NTCPVCRYEL PTDDVDYERR KSHIRTSRDA I
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.