CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006709.1-P	Field mustard	plastid	98.22	98.47
CDX80258	Canola	plastid	74.37	82.54
CDY48679	Canola	cytosol, plastid	69.54	82.04
CDY33046	Canola	plastid	69.29	79.82
CDY53450	Canola	cytosol	61.93	75.78
CDY61251	Canola	cytosol	63.2	68.98
CDX99105	Canola	cytosol, plastid	53.3	64.81
AT5G59550.2	Thale cress	nucleus, plastid	81.22	62.5
Os03t0271600-01	Rice	plastid	37.82	53.41
GSMUA_Achr7P15040_001	Banana	mitochondrion	42.64	53.16
EER95109	Sorghum	plastid	36.8	52.73
Zm00001d028590_P001	Maize	plastid	36.8	52.16
Zm00001d047824_P001	Maize	plastid	36.8	52.16
TraesCS4A01G095800.1	Wheat	cytosol	37.06	52.14
TraesCS4B01G209100.1	Wheat	plastid	37.06	52.14
TraesCS4D01G209500.1	Wheat	plastid	37.06	52.14
KRH10229	Soybean	nucleus	41.37	51.91
KRH23103	Soybean	nucleus	41.12	51.59
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	46.7	47.67
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	42.39	47.58
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.12	47.09
KRH29763	Soybean	nucleus	43.15	47.09
Solyc06g005650.2.1	Tomato	extracellular	23.86	47.0
GSMUA_Achr10P...	Banana	mitochondrion	39.85	46.59
KRH24759	Soybean	nucleus	42.64	46.54
GSMUA_Achr5P07070_001	Banana	nucleus	37.56	44.98
Os05t0110000-01	Rice	mitochondrion	37.82	44.74
CDY20473	Canola	nucleus, plastid	37.82	44.61
PGSC0003DMT400005512	Potato	mitochondrion	43.65	44.56
TraesCS3D01G532300.1	Wheat	cytosol	43.65	44.56
Zm00001d035677_P001	Maize	plastid	39.09	44.25
TraesCS3B01G595200.1	Wheat	cytosol	44.16	43.61
TraesCS1A01G029800.1	Wheat	cytosol	43.65	43.11
CDY07641	Canola	nucleus	40.86	43.05
CDX74839	Canola	cytosol, plastid	35.28	42.9
EES17560	Sorghum	plastid	44.92	42.86
GSMUA_Achr2P19140_001	Banana	mitochondrion	39.34	42.82
TraesCS1B01G036900.1	Wheat	cytosol	43.15	42.61
HORVU7Hr1G055010.1	Barley	cytosol	23.86	42.53
HORVU1Hr1G004330.14	Barley	cytosol	43.15	42.39
TraesCS1D01G030300.1	Wheat	nucleus	43.15	42.29
CDY24951	Canola	nucleus	40.1	42.13
Zm00001d011076_P001	Maize	plastid	41.37	42.12
GSMUA_Achr10P...	Banana	mitochondrion	42.39	41.54
HORVU4Hr1G060130.1	Barley	cytosol	37.06	41.48
HORVU3Hr1G041030.1	Barley	mitochondrion	37.82	38.5
Os01t0972000-01	Rice	nucleus	32.23	38.02
GSMUA_Achr10P...	Banana	nucleus	27.16	37.94
HORVU3Hr1G115000.7	Barley	mitochondrion	36.8	36.99
CDX82271	Canola	cytosol	19.29	35.68
CDY36069	Canola	cytosol	19.54	35.48
CDY72364	Canola	cytosol	18.78	33.33
CDY24592	Canola	nucleus	22.84	28.04
CDY33437	Canola	cytosol	22.84	27.78
CDY68603	Canola	cytosol	17.01	27.69
CDY32333	Canola	cytosol	16.5	27.66
CDY25360	Canola	cytosol, nucleus, plastid	22.08	26.93
CDX94665	Canola	nucleus	15.99	26.81
CDY46577	Canola	nucleus	19.8	26.8
CDY50031	Canola	cytosol	19.54	26.55
CDX74533	Canola	cytosol	19.54	26.37
CDY01669	Canola	plastid	21.57	26.32
CDX75998	Canola	nucleus	12.69	26.04
CDY10554	Canola	cytosol	20.05	25.9
CDY22483	Canola	mitochondrion	19.8	25.74
CDY56081	Canola	nucleus	15.48	25.52
CDY23878	Canola	mitochondrion, nucleus	19.54	25.25
CDY43991	Canola	nucleus	19.8	25.24
CDY56022	Canola	nucleus	20.05	25.24
CDY35437	Canola	mitochondrion, nucleus	20.3	25.24
CDY22790	Canola	nucleus	17.26	25.19
CDY27204	Canola	mitochondrion, nucleus	19.8	25.0
CDX79968	Canola	mitochondrion, nucleus	18.78	24.92
CDX72127	Canola	mitochondrion	19.8	24.68
CDX92768	Canola	nucleus	19.29	24.6
CDX81263	Canola	cytosol, peroxisome, plastid	18.02	24.48
CDY26096	Canola	nucleus	18.02	24.15
CDY18690	Canola	cytosol, peroxisome, plastid	18.02	23.75
CDY42740	Canola	nucleus	19.29	23.6
CDX92770	Canola	nucleus	19.29	23.46
CDY08249	Canola	cytosol	19.8	23.28
CDX89343	Canola	cytosol, mitochondrion	20.56	23.01
CDY56080	Canola	cytosol	16.5	22.89
CDY32791	Canola	nucleus	20.3	22.73
CDY28208	Canola	cytosol	13.2	22.41
CDX94901	Canola	cytosol	17.51	21.97
CDX94342	Canola	mitochondrion, nucleus	21.32	21.71
CDY42507	Canola	cytosol	18.53	21.53
CDY01221	Canola	cytosol	10.66	19.27
CDY58938	Canola	nucleus	20.3	18.14
CDY03622	Canola	nucleus	20.3	17.94
CDY02194	Canola	peroxisome	17.26	17.09
CDY51628	Canola	peroxisome	17.26	16.75
CDY69134	Canola	cytosol	11.93	16.15
CDX78323	Canola	cytosol	11.42	15.62
CDY21513	Canola	cytosol	13.96	15.45
CDX69973	Canola	cytosol	13.96	15.28
CDX90972	Canola	cytosol	12.44	14.63
CDX69496	Canola	cytosol	10.15	13.89
CDY34722	Canola	cytosol	13.71	13.85
CDX85531	Canola	cytosol	11.93	13.7
CDY34721	Canola	cytosol	13.45	13.59
CDY26465	Canola	cytosol	11.68	13.57
CDY11934	Canola	nucleus	21.83	13.19
CDY23599	Canola	golgi, mitochondrion	19.54	12.64

Protein Annotations

EnsemblPlants:CDX88709	EnsemblPlantsGene:GSBRNA2T00148757001	Gene3D:3.30.40.10	GO:A0A078DJB8	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:CDX88709	ProteinID:CDX88709.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE0EFE	MapMan:35.1	:	:

Description

BnaA03g09400D

Coordinates

chrLK031856:-:629351..630535

Molecular Weight (calculated)

42765.1 Da

IEP (calculated)

5.763

GRAVY (calculated)

-0.460

Length

394 amino acids

Sequence
(BLAST)

001: MPSPSTPITS SYWCYSCTRF VSVWSESEQG ATTVSVSCPH CDGGFIEEIT DPSSSAAATE LTPPPSTEVR SIINNRRSII RRRRSTPHPS FNPVIVLQGG
101: AGERDDGEEE EARDRRRRAF EFYYDDGSGL GLRPLPDSVS EILMGSGFER LLEQLSQIDA AAGIGLGRSG NPPASKSAIE SLPRVEISDC HVGAEVNCAV
201: CTEVFEAETE AREMPCKHIF HEDCIVPWLS IRNSCPVCRF ELASDGNGEE GDNNPVGMTI WRLPGGGFAV GRFNAAMREG ERVLPVVLTE MDGGGIGGNS
301: DGPRRISWVR ANGTFESGSN NGGGGSGSGG RLRRMVRGMV SLMRRVRPNR GVSSSLNQLG LDSEVETRVM DRSNSVLRRY FGRSRSNRDS SVLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.