Factsheet for GSMUA_AchrUn_randomP20610_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	62.96	64.24
GSMUA_Achr7P15040_001	Banana	mitochondrion	57.55	63.92
GSMUA_Achr10P...	Banana	mitochondrion	57.55	59.94
GSMUA_Achr5P07070_001	Banana	nucleus	54.13	57.75
Os05t0110000-01	Rice	mitochondrion	54.13	57.06
TraesCS3D01G532300.1	Wheat	cytosol	61.54	55.96
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	61.25	55.7
GSMUA_Achr2P19140_001	Banana	mitochondrion	56.98	55.25
TraesCS3B01G595200.1	Wheat	cytosol	62.39	54.89
Zm00001d035677_P001	Maize	plastid	53.56	54.02
KRH10229	Soybean	nucleus	47.58	53.18
TraesCS1A01G029800.1	Wheat	cytosol	60.11	52.88
KRG97885	Soybean	mitochondrion	53.56	52.66
TraesCS1B01G036900.1	Wheat	cytosol	59.83	52.63
GSMUA_Achr10P...	Banana	mitochondrion	60.11	52.49
HORVU1Hr1G004330.14	Barley	cytosol	59.83	52.37
TraesCS1D01G030300.1	Wheat	nucleus	59.83	52.24
KRH23103	Soybean	nucleus	46.72	52.23
KRH24759	Soybean	nucleus	52.42	50.97
PGSC0003DMT400005512	Potato	mitochondrion	55.56	50.52
KRH29763	Soybean	nucleus	51.85	50.42
KRH30994	Soybean	nucleus	56.41	50.38
HORVU3Hr1G041030.1	Barley	mitochondrion	55.27	50.13
CDY20473	Canola	nucleus, plastid	46.72	49.1
GSMUA_Achr10P...	Banana	nucleus	39.32	48.94
HORVU3Hr1G115000.7	Barley	mitochondrion	54.42	48.72
PGSC0003DMT400016233	Potato	nucleus	54.42	48.48
Solyc04g011610.1.1	Tomato	nucleus	54.42	48.35
Zm00001d011076_P001	Maize	plastid	53.28	48.32
EES17560	Sorghum	plastid	56.7	48.18
Bra005020.1-P	Field mustard	nucleus, plastid	46.15	47.51
CDX99105	Canola	cytosol, plastid	43.59	47.22
CDX74839	Canola	cytosol, plastid	43.59	47.22
Solyc06g005650.2.1	Tomato	extracellular	26.78	47.0
Os01t0972000-01	Rice	nucleus	44.44	46.71
CDY48679	Canola	cytosol, plastid	44.16	46.41
HORVU7Hr1G055010.1	Barley	cytosol	28.77	45.7
CDY61251	Canola	cytosol	46.72	45.43
CDX80258	Canola	plastid	45.58	45.07
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	47.58	44.77
Bra020313.1-P	Field mustard	plastid	49.29	44.47
CDY53450	Canola	cytosol	40.74	44.41
CDY33046	Canola	plastid	43.02	44.15
Bra000143.1-P	Field mustard	nucleus	47.01	44.0
CDY07641	Canola	nucleus	46.72	43.85
CDY24951	Canola	nucleus	46.15	43.2
KRH15082	Soybean	nucleus	47.01	43.19
AT2G39720.2	Thale cress	nucleus	49.29	43.14
AT3G46620.1	Thale cress	cytosol, plastid	48.15	42.78
Bra006709.1-P	Field mustard	plastid	47.58	42.49
KRH73053	Soybean	nucleus	47.29	42.46
CDX88709	Canola	cytosol, plastid	47.58	42.39
Bra002559.1-P	Field mustard	plastid	47.58	42.07
GSMUA_Achr8P09890_001	Banana	nucleus	23.65	35.93
GSMUA_Achr9P05060_001	Banana	nucleus	18.8	35.48
GSMUA_AchrUn_...	Banana	nucleus	25.36	34.5
AT5G59550.2	Thale cress	nucleus, plastid	49.29	33.79
GSMUA_Achr5P19380_001	Banana	plastid	18.23	33.51
GSMUA_Achr7P13060_001	Banana	mitochondrion	23.08	32.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	23.36	31.66
GSMUA_Achr11P...	Banana	nucleus	23.36	30.37
GSMUA_Achr6P08590_001	Banana	nucleus	22.79	27.3
GSMUA_Achr5P07680_001	Banana	nucleus	22.51	26.51
GSMUA_Achr10P...	Banana	nucleus	22.79	26.4
GSMUA_Achr2P03780_001	Banana	cytosol	25.93	25.93
GSMUA_Achr11P...	Banana	mitochondrion	21.65	25.42
GSMUA_Achr7P18340_001	Banana	nucleus	21.65	25.33
GSMUA_Achr4P02460_001	Banana	nucleus	17.66	14.98
GSMUA_Achr8P24510_001	Banana	cytosol	16.81	14.9
GSMUA_Achr3P06300_001	Banana	cytosol	15.38	10.34
GSMUA_Achr11P...	Banana	cytosol	20.23	9.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:DUF1117	EnsemblPlantsGene:GSMUA_AchrUn_randomG20610_001	EnsemblPlants:GSMUA_AchrUn_randomP20610_001	EnsemblPlants:GSMUA_AchrUn_randomT20610_001
InterPro:IPR001841	InterPro:IPR013083	UniProt:M0UAX0	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029483DA
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20610_001]

Coordinates

chrchrUn_random:+:99754449..99755976

Molecular Weight (calculated)

38338.9 Da

IEP (calculated)

6.703

GRAVY (calculated)

-0.463

Length

351 amino acids

Sequence
(BLAST)

001: MMTSMATAPS YWCYRCSRFV RVWPRDAVVC PDCGGGFLEE VDSPPRPLPV SAASAEPRRG DADRAAGNSF ELYYDDGSGS GLRPLPESMS DFLMGSGFER
101: LLDQLAQIEV NGFGGGGGFE HPPASKAAIE SMPTIEIADG HIMMESHCAV CKDPFELGAE AREMPCKHIY HQDCILPWLL LRNSCPVCRH EMPTDAPERG
201: MAEPDADEQT HVAGNEEEMV GLTIWRLPGG GFAVGRFTGG RRAGERGLPV VYTEVDGGFS TGGAPRRISW SSRGSRSREG GGIGQAFRSF FSFFRRLRSS
301: STTSSRLSSE SRSTSTSSLR NRRHSIFSRS SRSRTTNWAL EDGNASAIAR W

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.