Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05060_001 | Banana | nucleus | 38.26 | 61.29 |
| GSMUA_Achr11P... | Banana | nucleus | 47.99 | 52.96 |
| GSMUA_Achr10P... | Banana | nucleus | 49.33 | 48.51 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 44.3 | 44.0 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 42.62 | 43.34 |
| Os03t0324900-01 | Rice | cytosol | 39.6 | 36.88 |
| Zm00001d047560_P001 | Maize | cytosol | 36.91 | 35.6 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 21.81 | 34.03 |
| KXG39475 | Sorghum | cytosol | 36.24 | 33.64 |
| Zm00001d008237_P001 | Maize | nucleus | 38.59 | 32.95 |
| Zm00001d040445_P001 | Maize | nucleus | 38.26 | 32.95 |
| EES00577 | Sorghum | nucleus | 38.93 | 32.31 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 40.27 | 32.26 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 39.6 | 32.07 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 24.83 | 32.03 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 34.56 | 31.79 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 39.26 | 31.2 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 38.93 | 30.77 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 35.57 | 30.46 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 35.23 | 30.43 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 24.83 | 30.08 |
| Os01t0276600-01 | Rice | nucleus | 32.89 | 29.79 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 34.9 | 29.71 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 24.5 | 28.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.81 | 25.19 |
| GSMUA_Achr11P... | Banana | mitochondrion | 24.5 | 24.41 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 25.84 | 24.37 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 27.18 | 23.08 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 26.51 | 22.51 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.83 | 21.96 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 23.49 | 21.28 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 24.16 | 20.93 |
| GSMUA_Achr10P... | Banana | nucleus | 19.46 | 20.57 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 23.49 | 19.34 |
| GSMUA_Achr10P... | Banana | mitochondrion | 23.15 | 17.16 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 16.11 | 11.59 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 14.77 | 11.11 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 14.77 | 8.43 |
| GSMUA_Achr11P... | Banana | cytosol | 18.46 | 7.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P07680_001 | EnsemblPlants:GSMUA_Achr5T07680_001 | EnsemblPlantsGene:GSMUA_Achr5G07680_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002953428 | UniProt:M0SWJ7 | MapMan:35.1 |
Description
Putative E3 ubiquitin-protein ligase RING1-like [Source:GMGC_GENE;Acc:GSMUA_Achr5G07680_001]
Coordinates
chr5:-:5511567..5512700
Molecular Weight (calculated)
31911.9 Da
IEP (calculated)
4.466
GRAVY (calculated)
-0.526
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEPLVARFW CHVCTQTVNP VTEAEIKCPR CDGGFLEEMD PPRGHADTPL DPASHRAFSL WTPFFLGLLG GGSLRRGGPH GEGEGDEDDV EHSNRDLDSQ
101: TAAQRPQGSS AILQLLQALG RSDSEGESER DYFLGTRSSL DLLLQHLAEN DPNRYGTPPA RKEAVDAMPT VKVEENTSCP VCLEDMEVGA EAREMPCKHK
201: FHGECILPWL ELHSSCPLCR FQLPADDPKV PSAGGGGSNA AEAGGEGSGD GGSRESARWL WIPVSWPFAG LFSLSLASQS HGNSSSTPPS STSGATES
101: TAAQRPQGSS AILQLLQALG RSDSEGESER DYFLGTRSSL DLLLQHLAEN DPNRYGTPPA RKEAVDAMPT VKVEENTSCP VCLEDMEVGA EAREMPCKHK
201: FHGECILPWL ELHSSCPLCR FQLPADDPKV PSAGGGGSNA AEAGGEGSGD GGSRESARWL WIPVSWPFAG LFSLSLASQS HGNSSSTPPS STSGATES
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.