Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P19380_001 | Banana | plastid | 27.35 | 50.26 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 17.95 | 33.87 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 21.08 | 32.03 |
| GSMUA_Achr11P... | Banana | nucleus | 23.65 | 30.74 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 21.08 | 30.08 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 27.07 | 30.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.94 | 29.84 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 24.79 | 29.69 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 24.79 | 29.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 27.07 | 28.19 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 23.08 | 27.18 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 19.94 | 27.03 |
| GSMUA_Achr11P... | Banana | mitochondrion | 22.79 | 26.76 |
| GSMUA_Achr10P... | Banana | nucleus | 21.08 | 26.24 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 25.64 | 26.16 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 24.5 | 26.14 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 25.93 | 25.93 |
| GSMUA_Achr10P... | Banana | nucleus | 21.37 | 24.75 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 25.36 | 24.59 |
| GSMUA_Achr10P... | Banana | mitochondrion | 27.07 | 23.63 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 17.95 | 15.91 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 18.23 | 15.46 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 18.23 | 12.26 |
| GSMUA_Achr11P... | Banana | cytosol | 22.22 | 10.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P03780_001 | EnsemblPlants:GSMUA_Achr2T03780_001 | EnsemblPlantsGene:GSMUA_Achr2G03780_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002969FDB | UniProt:M0S4W9 | MapMan:35.1 |
Description
Putative E3 ubiquitin-protein ligase RING1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G03780_001]
Coordinates
chr2:-:9397955..9402408
Molecular Weight (calculated)
38040.0 Da
IEP (calculated)
4.665
GRAVY (calculated)
-0.209
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGPGSDF QEYFCHQCQR NVAIFPSSTL DITCPICRGG FLEELRSPRD LADLLGPVRS SEPSPTPGPA PFNPMLFLQD YMRQLLSGGA NIQVVLEGGP
101: VVGAGNLGDY FIGPGLERLI QQLAENDPNR YGTPPAAKSA VESLPDIRIS AESLASDEAQ CAVCKDAFEM GDEAKLMPCK HIYHKDCILP WLGLHNSCPV
201: CRYELPTDDT DYEQRRGAPA ARTLSGVGNS GGSTAGASVE GNSPGSGMLQ RSFSISLPWP FMPFATQGLD GHVVGVGDGG NGNAREELRG WNSGTLSEVY
301: IPAFCSETSR IQVSPYFDLF LSIGKKRYIY ICYILLFWYD DLRLNSNTLS K
101: VVGAGNLGDY FIGPGLERLI QQLAENDPNR YGTPPAAKSA VESLPDIRIS AESLASDEAQ CAVCKDAFEM GDEAKLMPCK HIYHKDCILP WLGLHNSCPV
201: CRYELPTDDT DYEQRRGAPA ARTLSGVGNS GGSTAGASVE GNSPGSGMLQ RSFSISLPWP FMPFATQGLD GHVVGVGDGG NGNAREELRG WNSGTLSEVY
301: IPAFCSETSR IQVSPYFDLF LSIGKKRYIY ICYILLFWYD DLRLNSNTLS K
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.