Factsheet for GSMUA_Achr2P19140_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15040_001	Banana	mitochondrion	69.61	79.75
GSMUA_Achr10P...	Banana	mitochondrion	73.48	78.93
GSMUA_Achr5P07070_001	Banana	nucleus	58.84	64.74
GSMUA_Achr10P...	Banana	mitochondrion	67.96	61.19
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	54.42	57.27
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	55.25	56.98
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	59.12	55.44
KRH10229	Soybean	nucleus	46.41	53.5
EER95109	Sorghum	plastid	40.33	53.09
Os03t0271600-01	Rice	plastid	40.88	53.05
Zm00001d028590_P001	Maize	plastid	40.61	52.88
KRH23103	Soybean	nucleus	45.86	52.87
TraesCS4D01G209500.1	Wheat	plastid	40.88	52.86
TraesCS4B01G209100.1	Wheat	plastid	40.88	52.86
TraesCS4A01G095800.1	Wheat	cytosol	40.88	52.86
Zm00001d047824_P001	Maize	plastid	40.33	52.52
Solyc06g005650.2.1	Tomato	extracellular	28.45	51.5
KRH29763	Soybean	nucleus	50.83	50.97
KRH24759	Soybean	nucleus	50.55	50.69
KRG97885	Soybean	mitochondrion	49.45	50.14
PGSC0003DMT400005512	Potato	mitochondrion	51.93	48.7
KRH30994	Soybean	nucleus	52.76	48.6
PGSC0003DMT400016233	Potato	nucleus	52.76	48.48
Solyc04g011610.1.1	Tomato	nucleus	52.49	48.1
CDY20473	Canola	nucleus, plastid	41.44	44.91
CDX80258	Canola	plastid	43.92	44.79
CDY53450	Canola	cytosol	39.78	44.72
Bra005020.1-P	Field mustard	nucleus, plastid	41.99	44.57
CDX74839	Canola	cytosol, plastid	39.78	44.44
GSMUA_Achr10P...	Banana	nucleus	34.53	44.33
CDY61251	Canola	cytosol	42.82	42.94
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.92	42.63
Bra000143.1-P	Field mustard	nucleus	43.92	42.4
HORVU4Hr1G060130.1	Barley	cytosol	41.16	42.33
CDY07641	Canola	nucleus	43.65	42.25
CDY24951	Canola	nucleus	43.37	41.87
AT3G46620.1	Thale cress	cytosol, plastid	45.03	41.27
CDX99105	Canola	cytosol, plastid	36.74	41.05
AT2G39720.2	Thale cress	nucleus	45.3	40.9
Bra020313.1-P	Field mustard	plastid	43.92	40.87
Bra002559.1-P	Field mustard	plastid	43.92	40.05
Bra006709.1-P	Field mustard	plastid	43.09	39.69
CDX88709	Canola	cytosol, plastid	42.82	39.34
KRH15082	Soybean	nucleus	41.44	39.27
CDY48679	Canola	cytosol, plastid	36.19	39.22
CDY33046	Canola	plastid	36.46	38.6
KRH73053	Soybean	nucleus	40.88	37.85
GSMUA_Achr8P09890_001	Banana	nucleus	22.38	35.06
GSMUA_Achr5P19380_001	Banana	plastid	17.4	32.98
AT5G59550.2	Thale cress	nucleus, plastid	45.03	31.84
GSMUA_AchrUn_...	Banana	nucleus	22.1	31.01
GSMUA_Achr7P13060_001	Banana	mitochondrion	20.72	30.49
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.55	30.12
GSMUA_Achr9P05060_001	Banana	nucleus	14.64	28.49
GSMUA_Achr11P...	Banana	nucleus	20.99	28.15
GSMUA_Achr2P03780_001	Banana	cytosol	24.59	25.36
GSMUA_Achr6P08590_001	Banana	nucleus	20.44	25.26
GSMUA_Achr10P...	Banana	nucleus	20.72	24.75
GSMUA_Achr11P...	Banana	mitochondrion	20.44	24.75
GSMUA_Achr5P07680_001	Banana	nucleus	19.34	23.49
GSMUA_Achr7P18340_001	Banana	nucleus	19.34	23.33
GSMUA_Achr4P02460_001	Banana	nucleus	16.57	14.49
GSMUA_Achr8P24510_001	Banana	cytosol	15.75	14.39
GSMUA_Achr11P...	Banana	cytosol	20.44	10.21
GSMUA_Achr3P06300_001	Banana	cytosol	14.09	9.77

Protein Annotations

EnsemblPlants:GSMUA_Achr2P19140_001	EnsemblPlants:GSMUA_Achr2T19140_001	EnsemblPlantsGene:GSMUA_Achr2G19140_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13923
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002965F1F
UniProt:M0S9A5	MapMan:35.1	:	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G19140_001]

Coordinates

chr2:-:19294140..19296396

Molecular Weight (calculated)

39981.4 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.437

Length

362 amino acids

Sequence
(BLAST)

001: MPSAIATASS YWCYRCSRFV RVWPRDAIVC PDCEGGFLEE VSSVAAHPRQ LSELRFQRNR RTSAGDRSSF NPVIVLRGPS DGARDADRAA ATTRYELYYD
101: DGTGSGLRPL PESISEFLMG SGFDRLLEQL ALVELNGIGR ERGCEHPRAS KAAIESMPTI EIVGDHIGKD CHCAVCMDLF ELGTEAREMP CKHIYHQDCI
201: LPWLSLRNSC PVCRHEMPTD AQGIGTPGAE GDEQPSAPRN DEESVGLTIW RLPGGGFAVG RFSGGRTAGE REFPVVYTEM DGGFNNSGAP RRISWTSRRS
301: RTREGRGIGM KGIQFSEGVR EVEAPTGMEM PMTLHDDDSL SQTCQFLMMQ IRRVLHQDIL GG

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.