Factsheet for Bra005020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74839	Canola	cytosol, plastid	94.43	99.38
Bra000143.1-P	Field mustard	nucleus	81.82	74.4
Os03t0271600-01	Rice	plastid	44.57	54.48
Zm00001d047824_P001	Maize	plastid	43.4	53.24
Zm00001d028590_P001	Maize	plastid	43.4	53.24
TraesCS4D01G209500.1	Wheat	plastid	43.7	53.21
TraesCS4B01G209100.1	Wheat	plastid	43.7	53.21
TraesCS4A01G095800.1	Wheat	cytosol	43.7	53.21
EER95109	Sorghum	plastid	42.82	53.09
GSMUA_Achr7P15040_001	Banana	mitochondrion	45.16	48.73
GSMUA_Achr10P...	Banana	mitochondrion	45.75	46.29
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	47.51	46.15
Zm00001d035677_P001	Maize	plastid	45.45	44.54
Os05t0110000-01	Rice	mitochondrion	43.11	44.14
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	44.28	43.9
GSMUA_Achr5P07070_001	Banana	nucleus	41.64	43.16
TraesCS3D01G532300.1	Wheat	cytosol	48.39	42.75
KRH73053	Soybean	nucleus	48.68	42.46
KRH15082	Soybean	nucleus	47.51	42.41
HORVU4Hr1G060130.1	Barley	cytosol	43.7	42.33
GSMUA_Achr2P19140_001	Banana	mitochondrion	44.57	41.99
Os01t0972000-01	Rice	nucleus	41.06	41.92
TraesCS3B01G595200.1	Wheat	cytosol	48.68	41.6
HORVU7Hr1G055010.1	Barley	cytosol	26.1	40.27
TraesCS1B01G036900.1	Wheat	cytosol	46.92	40.1
TraesCS1D01G030300.1	Wheat	nucleus	47.21	40.05
TraesCS1A01G029800.1	Wheat	cytosol	46.63	39.85
HORVU1Hr1G004330.14	Barley	cytosol	46.63	39.65
Bra020313.1-P	Field mustard	plastid	45.16	39.59
GSMUA_Achr10P...	Banana	mitochondrion	46.63	39.55
Zm00001d011076_P001	Maize	plastid	44.57	39.28
Bra002559.1-P	Field mustard	plastid	45.45	39.04
EES17560	Sorghum	plastid	47.21	38.98
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.94	38.34
Bra006709.1-P	Field mustard	plastid	43.4	37.66
GSMUA_Achr10P...	Banana	nucleus	30.79	37.23
HORVU3Hr1G041030.1	Barley	mitochondrion	42.23	37.21
HORVU3Hr1G115000.7	Barley	mitochondrion	41.64	36.22
Bra001767.1-P	Field mustard	nucleus	17.89	28.5
Bra014684.1-P	Field mustard	nucleus	15.54	27.6
Bra000207.1-P	Field mustard	mitochondrion, nucleus	23.75	25.55
Bra038246.1-P	Field mustard	nucleus	24.34	25.54
Bra007253.1-P	Field mustard	mitochondrion, nucleus	22.58	24.84
Bra030136.1-P	Field mustard	cytosol	17.6	24.79
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.46	24.62
Bra035835.1-P	Field mustard	nucleus	23.46	24.46
Bra004589.1-P	Field mustard	nucleus	17.3	24.18
Bra030854.1-P	Field mustard	nucleus	19.94	21.79
Bra037999.1-P	Field mustard	nucleus	18.48	21.72
Bra037800.1-P	Field mustard	cytosol	19.06	21.52
Bra027436.1-P	Field mustard	nucleus	18.18	20.06
Bra019109.1-P	Field mustard	nucleus	18.48	19.57
Bra002823.1-P	Field mustard	nucleus	19.35	18.75
Bra037109.1-P	Field mustard	nucleus	18.18	18.56
Bra011215.1-P	Field mustard	cytosol	12.32	18.1
Bra005970.1-P	Field mustard	cytosol	14.37	16.9
Bra026444.1-P	Field mustard	nucleus	18.18	16.71
Bra014266.1-P	Field mustard	nucleus	21.41	16.55
Bra021467.1-P	Field mustard	nucleus	16.72	14.62
Bra013006.1-P	Field mustard	nucleus	16.42	13.43
Bra009323.1-P	Field mustard	cytosol	14.66	13.19
Bra008671.1-P	Field mustard	nucleus	10.85	12.89
Bra028935.1-P	Field mustard	nucleus	21.41	12.85
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.9	11.08

Protein Annotations

EnsemblPlants:Bra005020.1	EnsemblPlants:Bra005020.1-P	EnsemblPlantsGene:Bra005020	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025473E5
UniProt:M4CLD3	MapMan:35.1	:	:	:	:

Description

AT2G39720 (E=7e-079) RHC2A | RHC2A; protein binding / zinc ion binding

Coordinates

chrA05:+:3001698..3002723

Molecular Weight (calculated)

37068.3 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.498

Length

341 amino acids

Sequence
(BLAST)

001: MASGSHWCYS CSRFVLITNS ISCPDCDGGF LEHLHQTPDS FHRQHRSPTR FPTPPTSNRS PNPVIVLRGS NPSDRSPFQM YYDDGSDSGL RPLPPSMTEF
101: LLGSGFDRLL DQISQIELNN NSNNSCDHPP ASKSAVEALP VIQIAPTHLE SDSQSHCAVC KETFILDSAA REMPCNHIYH PDCILPWLAI RNSCPVCRHE
201: LPAEEEDDVA ATTVAGREEA GEEDSSAGMT IWRLPGGGFA VGRVPGGWRG GMPVVYTEVD GGRLGEERLP RRVARRGGSS RERSGGFAGR IMRLFGCFSG
301: SSGSIASGSG SGSGSRSNRR SRSSFALFRT ASSRRRHWLA S

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.