Factsheet for TraesCS1A01G029800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G030300.1	Wheat	nucleus	98.0	97.26
TraesCS1B01G036900.1	Wheat	cytosol	96.99	96.99
HORVU1Hr1G004330.14	Barley	cytosol	92.48	92.02
Os05t0110000-01	Rice	mitochondrion	71.68	85.89
Zm00001d035677_P001	Maize	plastid	63.91	73.28
EES17560	Sorghum	plastid	70.18	67.8
Zm00001d011076_P001	Maize	plastid	64.66	66.67
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.88	60.11
TraesCS4A01G095800.1	Wheat	cytosol	41.1	58.57
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.37	56.1
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	54.14	55.96
Os01t0972000-01	Rice	nucleus	46.62	55.69
KRH23103	Soybean	nucleus	43.11	54.78
KRH10229	Soybean	nucleus	42.86	54.46
KRH24759	Soybean	nucleus	48.37	53.46
KRH29763	Soybean	nucleus	47.62	52.63
KRG97885	Soybean	mitochondrion	46.87	52.38
PGSC0003DMT400005512	Potato	mitochondrion	49.87	51.55
Solyc06g005650.2.1	Tomato	extracellular	25.56	51.0
Solyc04g011610.1.1	Tomato	nucleus	49.37	49.87
PGSC0003DMT400016233	Potato	nucleus	49.12	49.75
KRH30994	Soybean	nucleus	48.62	49.36
CDY20473	Canola	nucleus, plastid	40.6	48.5
Bra005020.1-P	Field mustard	nucleus, plastid	39.85	46.63
CDX74839	Canola	cytosol, plastid	37.59	46.3
CDY53450	Canola	cytosol	37.09	45.96
CDX80258	Canola	plastid	40.85	45.92
Bra000143.1-P	Field mustard	nucleus	42.11	44.8
CDY07641	Canola	nucleus	41.85	44.65
CDY24951	Canola	nucleus	41.6	44.27
CDY61251	Canola	cytosol	39.85	44.04
Bra006709.1-P	Field mustard	plastid	43.11	43.77
Bra020313.1-P	Field mustard	plastid	42.61	43.7
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.85	43.7
CDX88709	Canola	cytosol, plastid	43.11	43.65
CDY48679	Canola	cytosol, plastid	36.09	43.11
Bra002559.1-P	Field mustard	plastid	42.86	43.07
CDX99105	Canola	cytosol, plastid	34.59	42.59
CDY33046	Canola	plastid	36.34	42.4
AT2G39720.2	Thale cress	nucleus	42.61	42.39
KRH15082	Soybean	nucleus	40.35	42.15
KRH73053	Soybean	nucleus	40.35	41.18
AT3G46620.1	Thale cress	cytosol, plastid	40.35	40.76
AT5G59550.2	Thale cress	nucleus, plastid	43.11	33.59
TraesCS3A01G440000.1	Wheat	mitochondrion	22.56	31.14
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	23.81	28.36
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	25.31	27.3
TraesCS6A01G330700.1	Wheat	mitochondrion	22.06	26.99
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	21.55	26.96
TraesCS7A01G247700.1	Wheat	cytosol, plastid	16.04	23.79
TraesCS4A01G129800.1	Wheat	cytosol	19.3	23.77
TraesCS3A01G189200.1	Wheat	cytosol	21.05	22.4
TraesCS6A01G288800.1	Wheat	cytosol, plastid	16.79	21.82
TraesCS3A01G330900.1	Wheat	mitochondrion	21.55	21.34
TraesCS5A01G467700.1	Wheat	nucleus	21.55	21.29
TraesCS7A01G391700.1	Wheat	cytosol	14.79	17.82
TraesCS5A01G145800.1	Wheat	nucleus	17.79	13.92

Protein Annotations

EnsemblPlants:TraesCS1A01G029800.1	EnsemblPlantsGene:TraesCS1A01G029800	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:13861501..13862700

Molecular Weight (calculated)

42456.5 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.404

Length

399 amino acids

Sequence
(BLAST)

001: MDTSPAASAA SYWCYSCDRF VRAASSPEGG GDVACPDCGG GFLEEMRRTP PAPAYLRRPR AHHANDLRLR RSRRAAAAAA AAASAGGGGD RAPFNPVIVL
101: RRSALGAGAA AGEDNNGDDD SALAAASSFE LFYDDGAGSG LRPLPESMSD FLMGSGFERL LGQLAQIEAG GLTRARETPP ASKAAVESMP TVAIAASHVA
201: ADCHCAVCKE PFELGAEARE MPCAHIYHED CILPWLQLRN SCPVCRHEMP TDTAAARSQA ASAGAEEETT VGLTIWRLPG GGFAVGRFAG GRRPEERELP
301: VVYTEMDGGF NHGGAPRRIS WGSRQSRSTE RSAIRRVFRN MFACFGRGHS ASSHASSSHM RPEEMTEASD HSAVFSHGSR SRSMSWRLED GHADTMVQR

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.