Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G000400.1 | Wheat | cytosol | 91.64 | 93.03 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 88.06 | 82.63 |
| Zm00001d045625_P001 | Maize | cytosol | 63.88 | 69.03 |
| EER89027 | Sorghum | nucleus | 65.37 | 68.22 |
| Os06t0101300-01 | Rice | nucleus | 67.46 | 66.86 |
| CDX82271 | Canola | cytosol | 30.75 | 48.36 |
| Bra001767.1-P | Field mustard | nucleus | 30.45 | 47.66 |
| CDY36069 | Canola | cytosol | 30.75 | 47.47 |
| CDY72364 | Canola | cytosol | 30.45 | 45.95 |
| KRH36132 | Soybean | nucleus | 34.93 | 40.91 |
| Bra038246.1-P | Field mustard | nucleus | 39.1 | 40.31 |
| CDY24592 | Canola | nucleus | 38.51 | 40.19 |
| CDY33437 | Canola | cytosol | 38.51 | 39.81 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 38.21 | 39.63 |
| Bra035835.1-P | Field mustard | nucleus | 38.21 | 39.14 |
| KRG90622 | Soybean | nucleus | 34.03 | 38.26 |
| Solyc04g009170.1.1 | Tomato | nucleus | 35.22 | 38.19 |
| CDY22790 | Canola | nucleus | 30.45 | 37.78 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 41.19 | 37.3 |
| PGSC0003DMT400082489 | Potato | nucleus | 34.93 | 36.34 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 40.0 | 36.31 |
| AT3G19950.2 | Thale cress | cytosol | 38.81 | 33.68 |
| CDY42507 | Canola | cytosol | 33.13 | 32.74 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 22.09 | 26.43 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 22.69 | 26.3 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 25.07 | 25.93 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 27.46 | 24.53 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 23.58 | 24.23 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 22.99 | 24.14 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 28.36 | 23.81 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 22.99 | 23.26 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 18.51 | 23.05 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 20.3 | 22.15 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 25.07 | 20.79 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 17.61 | 14.64 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 19.4 | 12.75 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G499200.1 | EnsemblPlantsGene:TraesCS4A01G499200 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4A:-:744274734..744276074
Molecular Weight (calculated)
34460.9 Da
IEP (calculated)
4.233
GRAVY (calculated)
-0.236
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSAPQQRY YCHQCDRAVS IAAPASRDDE VFCPLCAGGF VEELLDDEDP PNPSPPLHPF FPLASFXXXR NPSDLAGVLG PPSPSAPRAS ANPTNNQFDV
101: TDFLHGHLGG LLSGGATIQI VLEGSSFPGG FASFGAGGPV PVPGGVSLGD YFMGSGLEQL IQQLAENDPS RYGTPPAAKA AVAALPDVAV SADMMAADGG
201: AQCAVCMDDF LLGAAAKQLP CNHVFHKDCI LPWLDLHSSC PVCRHEMPTD DPDYENHQRQ AAAATPAAAA AAPASPGGGG PSPRVMERRF RISLPWPLRA
301: AFAAQQAESS DQDGAGSGDY SNDPDASGRS YDDLD
101: TDFLHGHLGG LLSGGATIQI VLEGSSFPGG FASFGAGGPV PVPGGVSLGD YFMGSGLEQL IQQLAENDPS RYGTPPAAKA AVAALPDVAV SADMMAADGG
201: AQCAVCMDDF LLGAAAKQLP CNHVFHKDCI LPWLDLHSSC PVCRHEMPTD DPDYENHQRQ AAAATPAAAA AAPASPGGGG PSPRVMERRF RISLPWPLRA
301: AFAAQQAESS DQDGAGSGDY SNDPDASGRS YDDLD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.