Factsheet for Solyc04g009170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082489	Potato	nucleus	91.59	87.89
CDX82271	Canola	cytosol	34.63	50.23
CDY36069	Canola	cytosol	35.28	50.23
Bra001767.1-P	Field mustard	nucleus	34.63	50.0
CDY72364	Canola	cytosol	33.98	47.3
KRG90622	Soybean	nucleus	43.04	44.63
KRH36132	Soybean	nucleus	41.1	44.41
Bra038246.1-P	Field mustard	nucleus	45.63	43.38
CDY33437	Canola	cytosol	45.31	43.21
CDY24592	Canola	nucleus	44.66	42.99
CDY25360	Canola	cytosol, nucleus, plastid	43.69	41.8
Bra035835.1-P	Field mustard	nucleus	43.69	41.28
Zm00001d045625_P001	Maize	cytosol	39.81	39.68
AT3G19950.2	Thale cress	cytosol	48.87	39.12
CDY22790	Canola	nucleus	33.33	38.15
EER89027	Sorghum	nucleus	38.51	37.07
Os06t0101300-01	Rice	nucleus	39.81	36.39
TraesCS7D01G000400.1	Wheat	cytosol	37.86	35.45
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	38.19	35.22
CDY42507	Canola	cytosol	36.89	33.63
Solyc03g098590.2.1	Tomato	cytosol	40.13	33.6
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	37.86	32.77
Solyc01g009000.2.1	Tomato	plastid	28.16	27.36
Solyc06g005650.2.1	Tomato	extracellular	16.83	26.0
Solyc01g050040.2.1	Tomato	nucleus	23.3	24.66
Solyc08g075910.1.1	Tomato	nucleus	22.98	23.59
Solyc01g104260.2.1	Tomato	mitochondrion	22.01	22.67
Solyc04g011610.1.1	Tomato	nucleus	28.16	22.03
Solyc09g074460.1.1	Tomato	nucleus	25.57	20.95
Solyc11g012950.1.1	Tomato	cytosol	21.36	19.82
Solyc02g089410.2.1	Tomato	nucleus	15.21	14.37
Solyc03g114680.2.1	Tomato	nucleus	21.04	13.05
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	16.5	12.85

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BP73
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g009170.1	EnsemblPlants:Solyc04g009170.1.1	UniParc:UPI00027655D7	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2671422..2672351

Molecular Weight (calculated)

33173.2 Da

IEP (calculated)

4.318

GRAVY (calculated)

-0.483

Length

309 amino acids

Sequence
(BLAST)

001: MSSAGITVAD GGAALYFCHK CSNTVTITPS PSGDLFCPTC NSDFVEEYEE PDPEPEMFPN FPNPGLLSSL LMGARPRSAP TTGSHQHSAP ATGSRVSPYT
101: AFFNSNRNPR QMSSGSDDFN PFEFLQTHLA ALRANGASFE FVIEGGNGGS GLQMPANYGD YFIGPGFEQL IQNLAENDPN RYGTPPASRA AVEGLPTIKV
201: DEELMRSELA QCAVCKDDFE MGSDVIQMPC KHVYHKDCII PWLELHSSCP VCRYELPTDE PENENRQRDN DGDSSGDGSA SGSGGSGRRF TTISLPWPLG
301: SFGASSSQG

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.