Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045625_P001 | Maize | cytosol | 88.16 | 91.29 |
| Os06t0101300-01 | Rice | nucleus | 72.9 | 69.23 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 68.22 | 65.37 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 66.98 | 65.15 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 68.22 | 61.34 |
| CDX82271 | Canola | cytosol | 33.64 | 50.7 |
| CDY36069 | Canola | cytosol | 33.96 | 50.23 |
| Bra001767.1-P | Field mustard | nucleus | 33.33 | 50.0 |
| CDY72364 | Canola | cytosol | 33.96 | 49.1 |
| Bra038246.1-P | Field mustard | nucleus | 43.61 | 43.08 |
| CDY33437 | Canola | cytosol | 42.99 | 42.59 |
| CDY24592 | Canola | nucleus | 42.37 | 42.37 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 42.37 | 42.11 |
| Bra035835.1-P | Field mustard | nucleus | 42.37 | 41.59 |
| Solyc04g009170.1.1 | Tomato | nucleus | 37.07 | 38.51 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 43.93 | 38.21 |
| KRH36132 | Soybean | nucleus | 33.96 | 38.11 |
| CDY22790 | Canola | nucleus | 31.46 | 37.41 |
| PGSC0003DMT400082489 | Potato | nucleus | 37.38 | 37.27 |
| KRG90622 | Soybean | nucleus | 34.27 | 36.91 |
| AT3G19950.2 | Thale cress | cytosol | 42.99 | 35.75 |
| CDY42507 | Canola | cytosol | 33.96 | 32.15 |
| EER92269 | Sorghum | nucleus | 25.23 | 28.42 |
| EER95109 | Sorghum | plastid | 23.05 | 26.91 |
| KXG33564 | Sorghum | mitochondrion | 23.99 | 25.5 |
| EER89401 | Sorghum | mitochondrion, nucleus | 26.48 | 25.45 |
| KXG39475 | Sorghum | cytosol | 23.68 | 23.68 |
| EER90075 | Sorghum | nucleus | 22.12 | 23.43 |
| EES00577 | Sorghum | nucleus | 25.86 | 23.12 |
| EES14331 | Sorghum | plastid | 20.25 | 22.18 |
| KXG22238 | Sorghum | plastid | 26.79 | 22.11 |
| EES17560 | Sorghum | plastid | 28.04 | 21.79 |
| KXG37275 | Sorghum | nucleus | 25.86 | 21.67 |
| KXG31176 | Sorghum | plastid | 23.68 | 21.35 |
| OQU85475 | Sorghum | cytosol | 20.25 | 20.31 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.82 | 13.95 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8066855 | UniProt:C5Z218 | EnsemblPlants:EER89027 | ProteinID:EER89027 |
| ProteinID:EER89027.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | SMART:SM00184 | EnsemblPlantsGene:SORBI_3010G000700 | SUPFAM:SSF57850 |
| unigene:Sbi.6416 | UniParc:UPI0001A8993F | RefSeq:XP_002437660.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:-:44687..47817
Molecular Weight (calculated)
33525.7 Da
IEP (calculated)
4.357
GRAVY (calculated)
-0.313
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPAALGF YCHQCDRNVS IAPPASPDAD VLCPRCGGGF VEELPPNPSP PPPPPSAAFF ASPSFDLRHP SDLSAFFGPT SPEPLAPGLF DPSNFLHDHF
101: GGLLSGGATI QIVLEGGPGL AAPPGLNLAD YFVGSAGLEQ LIQQLAENDP NRYGTPPAAK SAVASLPDVA VSADMMQADG GAQCAVCMDD FHLGAAAKQL
201: PCKHVFHKDC ILPWLDLHSS CPVCRFELPT DDPDYNHTHQ QQHAASPAPA PAPAASSSPR VAERRFRISL PWPLRAAFGA AQAESSNPNN YDTPPSWSGG
301: NDNDNDAGGG PQSQTGYDDL D
101: GGLLSGGATI QIVLEGGPGL AAPPGLNLAD YFVGSAGLEQ LIQQLAENDP NRYGTPPAAK SAVASLPDVA VSADMMQADG GAQCAVCMDD FHLGAAAKQL
201: PCKHVFHKDC ILPWLDLHSS CPVCRFELPT DDPDYNHTHQ QQHAASPAPA PAPAASSSPR VAERRFRISL PWPLRAAFGA AQAESSNPNN YDTPPSWSGG
301: NDNDNDAGGG PQSQTGYDDL D
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.