CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0351800-01	Rice	nucleus	92.63	93.29
Zm00001d047476_P001	Maize	mitochondrion	94.74	92.47
TraesCS3D01G432800.1	Wheat	mitochondrion	86.67	85.47
TraesCS3A01G440000.1	Wheat	mitochondrion	86.67	85.47
TraesCS3B01G474100.1	Wheat	mitochondrion	85.96	85.07
HORVU3Hr1G096110.1	Barley	mitochondrion	85.96	84.78
GSMUA_Achr8P09890_001	Banana	nucleus	53.68	66.23
VIT_08s0040g00590.t01	Wine grape	nucleus	57.54	52.23
GSMUA_Achr11P...	Banana	mitochondrion	52.28	49.83
KRH71659	Soybean	nucleus	53.68	49.51
KRH33121	Soybean	nucleus	52.98	48.87
PGSC0003DMT400058464	Potato	nucleus	54.04	48.43
Solyc01g009000.2.1	Tomato	plastid	53.33	47.8
KRH14643	Soybean	nucleus	55.44	47.02
KRH18631	Soybean	nucleus	50.18	46.73
VIT_06s0009g02350.t01	Wine grape	mitochondrion	53.33	45.24
Bra004589.1-P	Field mustard	nucleus	38.25	44.67
Bra007253.1-P	Field mustard	mitochondrion, nucleus	47.37	43.55
Bra014684.1-P	Field mustard	nucleus	29.12	43.23
CDX75998	Canola	nucleus	29.12	43.23
Bra000207.1-P	Field mustard	mitochondrion, nucleus	48.07	43.22
CDY35437	Canola	mitochondrion, nucleus	48.07	43.22
CDY27204	Canola	mitochondrion, nucleus	47.02	42.95
AT3G56580.1	Thale cress	mitochondrion	48.07	42.81
CDX72127	Canola	mitochondrion	47.37	42.72
AT2G40830.4	Thale cress	mitochondrion	48.77	42.38
CDY23878	Canola	mitochondrion, nucleus	45.26	42.3
CDX79968	Canola	mitochondrion, nucleus	43.86	42.09
KRH73496	Soybean	mitochondrion	54.39	41.78
KXG33564	Sorghum	mitochondrion	44.21	41.72
CDY22483	Canola	mitochondrion	43.86	41.25
KRH18634	Soybean	nucleus	32.98	39.83
PGSC0003DMT400079301	Potato	nucleus	41.75	39.67
Solyc08g075910.1.1	Tomato	nucleus	41.4	39.2
CDX94901	Canola	cytosol	40.7	36.94
EER95109	Sorghum	plastid	25.96	26.91
EER89027	Sorghum	nucleus	28.42	25.23
EER89401	Sorghum	mitochondrion, nucleus	29.47	25.15
KXG39475	Sorghum	cytosol	27.37	24.3
KXG31176	Sorghum	plastid	29.82	23.88
EES00577	Sorghum	nucleus	29.12	23.12
EES17560	Sorghum	plastid	30.18	20.82
KXG37275	Sorghum	nucleus	27.37	20.37
KXG22238	Sorghum	plastid	26.67	19.54
EER90075	Sorghum	nucleus	20.7	19.47
OQU85475	Sorghum	cytosol	21.4	19.06
EES14331	Sorghum	plastid	18.6	18.09
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	18.25	13.44

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8082290	UniProt:C5WZS7	EnsemblPlants:EER92269	ProteinID:EER92269
ProteinID:EER92269.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF1	SMART:SM00184	EnsemblPlantsGene:SORBI_3001G371300	SUPFAM:SSF57850
unigene:Sbi.5936	UniParc:UPI0001A82258	RefSeq:XP_002465271.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:65960387..65962630

Molecular Weight (calculated)

32112.9 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.638

Length

285 amino acids

Sequence
(BLAST)

001: MSVGRQSYWC YQCRQRVRPR GREMVCPYCD SGFVAEMDDV DALMSHFVGM DPDFHRDPRF GIMEAISAVM RHGMSGMNRE VDVRGRPNIF SDLEMEFGSG
101: PWLLFRGQLP GHLTEDNGFD VFINGRRGVG MRRANIADYF VGPGLDDLIE QLTQNDRRGP PPAAQSSIDA MPTVKITQRH LSGDSHCPVC KEKFELGSEA
201: REMPCKHLYH SDCIVPWLEQ HNSCPVCRYE LPTQGSTTGA SCSHTRSTNQ SQSSSSSSSS GRTSGRQRRR NPFSFLWPFR SSSSR

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.