Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 98.96 | 98.96 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 98.62 | 98.96 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 94.81 | 94.81 |
| EER92269 | Sorghum | nucleus | 85.47 | 86.67 |
| Os03t0351800-01 | Rice | nucleus | 84.08 | 85.87 |
| Zm00001d047476_P001 | Maize | mitochondrion | 84.08 | 83.22 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 50.52 | 63.2 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 56.06 | 51.59 |
| KRH71659 | Soybean | nucleus | 52.25 | 48.87 |
| KRH33121 | Soybean | nucleus | 51.9 | 48.54 |
| PGSC0003DMT400058464 | Potato | nucleus | 52.94 | 48.11 |
| GSMUA_Achr11P... | Banana | mitochondrion | 49.13 | 47.49 |
| Solyc01g009000.2.1 | Tomato | plastid | 51.9 | 47.17 |
| KRH18631 | Soybean | nucleus | 48.44 | 45.75 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 52.6 | 45.24 |
| KRH14643 | Soybean | nucleus | 52.6 | 45.24 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 46.37 | 43.23 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 47.4 | 43.22 |
| CDY35437 | Canola | mitochondrion, nucleus | 47.4 | 43.22 |
| Bra004589.1-P | Field mustard | nucleus | 36.33 | 43.03 |
| CDY27204 | Canola | mitochondrion, nucleus | 46.37 | 42.95 |
| AT3G56580.1 | Thale cress | mitochondrion | 47.4 | 42.81 |
| CDX72127 | Canola | mitochondrion | 46.37 | 42.41 |
| AT2G40830.4 | Thale cress | mitochondrion | 47.75 | 42.07 |
| CDY22483 | Canola | mitochondrion | 43.6 | 41.58 |
| CDX75998 | Canola | nucleus | 27.34 | 41.15 |
| Bra014684.1-P | Field mustard | nucleus | 27.34 | 41.15 |
| CDY23878 | Canola | mitochondrion, nucleus | 43.25 | 40.98 |
| KRH73496 | Soybean | mitochondrion | 51.9 | 40.43 |
| CDX79968 | Canola | mitochondrion, nucleus | 41.18 | 40.07 |
| KRH18634 | Soybean | nucleus | 32.53 | 39.83 |
| PGSC0003DMT400079301 | Potato | nucleus | 39.1 | 37.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 38.75 | 37.21 |
| CDX94901 | Canola | cytosol | 38.41 | 35.35 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 42.91 | 30.77 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 26.3 | 27.14 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 28.37 | 25.71 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 28.03 | 24.85 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 26.99 | 24.07 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 30.8 | 24.05 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 26.3 | 22.69 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 31.14 | 22.56 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 27.34 | 19.55 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 17.99 | 19.33 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 24.91 | 19.2 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 19.72 | 18.57 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 19.72 | 17.22 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 25.95 | 14.71 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G440000.1 | EnsemblPlantsGene:TraesCS3A01G440000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3A:-:683070742..683071611
Molecular Weight (calculated)
32390.0 Da
IEP (calculated)
7.887
GRAVY (calculated)
-0.664
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGRQTYWC FQCRQRVRPR GREMECPYCD AGFVAEMDDV DALMSQFVGM YSDFHRDPRF GIMEAMSTVM RHGMGSMNRE ADVRGRPSIL SELEMEFGSG
101: PWLLFRGQLP GHLSEANNGF DVFVNGRRGV GMRRADVADY FVGPGLEDLI EQLTHNDRRG PPPASQSSID AMPSVRITAR HLTGDSHCPV CKDKFELGSE
201: AREMPCKHLY HSDCILPWLE QHNSCPVCRY ELPTQSSSGA SCSRSRSTNQ NDSSSSSSSS GRTSGRQRRR NPFSFLWPFR SSSSSTGSR
101: PWLLFRGQLP GHLSEANNGF DVFVNGRRGV GMRRADVADY FVGPGLEDLI EQLTHNDRRG PPPASQSSID AMPSVRITAR HLTGDSHCPV CKDKFELGSE
201: AREMPCKHLY HSDCILPWLE QHNSCPVCRY ELPTQSSSGA SCSRSRSTNQ NDSSSSSSSS GRTSGRQRRR NPFSFLWPFR SSSSSTGSR
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.