Factsheet for TraesCS3A01G330900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G324300.1	Wheat	mitochondrion	79.4	93.57
TraesCS3B01G361000.1	Wheat	cytosol	76.92	90.38
Zm00001d043183_P001	Maize	plastid	53.35	66.15
Os01t0802000-01	Rice	nucleus	53.35	65.35
KXG33564	Sorghum	mitochondrion	47.15	62.91
Zm00001d012564_P001	Maize	mitochondrion	50.37	58.67
TraesCS3A01G440000.1	Wheat	mitochondrion	30.77	42.91
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	19.85	25.08
TraesCS4A01G095800.1	Wheat	cytosol	16.13	23.21
TraesCS6A01G330700.1	Wheat	mitochondrion	17.87	22.09
TraesCS1A01G029800.1	Wheat	cytosol	21.34	21.55
TraesCS4A01G129800.1	Wheat	cytosol	16.63	20.68
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	18.86	20.54
TraesCS3A01G189200.1	Wheat	cytosol	16.63	17.87
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	14.64	17.61
TraesCS5A01G467700.1	Wheat	nucleus	16.38	16.34
TraesCS6A01G288800.1	Wheat	cytosol, plastid	11.17	14.66
TraesCS7A01G247700.1	Wheat	cytosol, plastid	9.68	14.5
TraesCS7A01G391700.1	Wheat	cytosol	9.93	12.08
TraesCS5A01G145800.1	Wheat	nucleus	15.14	11.96

Protein Annotations

EnsemblPlants:TraesCS3A01G330900.1	EnsemblPlantsGene:TraesCS3A01G330900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:+:575491090..575494090

Molecular Weight (calculated)

43924.9 Da

IEP (calculated)

8.798

GRAVY (calculated)

-0.576

Length

403 amino acids

Sequence
(BLAST)

001: MGPRAVQRTA HCSLDRCHRR ATLRRKPRRV YMTAAPDHSP SHITHTLLAT PSSAPTARPS AIPPPRRDQR FKMSNRATHW CYACRRPIRL RGQDIICPNC
101: NDGFIQEISE TRGALNNYGM FGPRFDDRLD GRFGMMDAMS ALMRRRMAEM GSNPVFDPNA AWASTTQGRP SPIGPRLIFG SNMPAQGSDD SGVNVLVRGG
201: RRIGADRPNF SGFLVGGPSL EALFEQLLLQ TGNRQGPAPA PQSVIDSMPV VRITRRHLSD DPVCPVCTER FEIGSEAREM PCKHLYHASC IIPWLVQHNS
301: CPVCRHPLPP QRGSDNNAAR PQPSAQAGEA VSRGVDGAGA DPGPVMRNGA DEGGSPFSFL WPFGSSSSGP SSYQYGGGGG EPAPAVYNDD PGQITYSEWH
401: YDP

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.