Factsheet for TraesCS3D01G324300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G361000.1	Wheat	cytosol	92.11	91.84
TraesCS3A01G330900.1	Wheat	mitochondrion	93.57	79.4
Os01t0802000-01	Rice	nucleus	64.04	66.57
Zm00001d043183_P001	Maize	plastid	63.16	66.46
KXG33564	Sorghum	mitochondrion	56.14	63.58
Zm00001d012564_P001	Maize	mitochondrion	59.94	59.25
TraesCS3D01G432800.1	Wheat	mitochondrion	37.13	43.94
TraesCS7D01G170800.1	Wheat	mitochondrion	23.39	25.0
TraesCS4D01G209500.1	Wheat	plastid	19.3	23.57
TraesCS6D01G309800.1	Wheat	mitochondrion	21.34	22.96
TraesCS3D01G532300.1	Wheat	cytosol	25.44	22.54
TraesCS1D01G030300.1	Wheat	nucleus	25.44	21.64
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	22.22	20.54
TraesCS4D01G176700.1	Wheat	cytosol	20.18	19.83
TraesCS1D01G305300.1	Wheat	nucleus	18.13	18.67
TraesCS7D01G000400.1	Wheat	cytosol	17.54	18.18
TraesCS3D01G192700.1	Wheat	cytosol	19.01	17.66
TraesCS5D01G480800.1	Wheat	nucleus	19.01	16.09
TraesCS7D01G246300.1	Wheat	plastid	12.28	15.61
TraesCS6D01G160300.1	Wheat	nucleus	15.79	15.52
TraesCS7D01G387300.1	Wheat	cytosol	12.28	12.88
TraesCS5D01G146400.1	Wheat	nucleus	17.84	12.01

Protein Annotations

EnsemblPlants:TraesCS3D01G324300.1	EnsemblPlantsGene:TraesCS3D01G324300	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr3D:+:437487153..437488552

Molecular Weight (calculated)

37136.8 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.472

Length

342 amino acids

Sequence
(BLAST)

001: MDCILSVIRY KMSNRATHWC YACRRPIRLR GQEIICPNCN DGFIQEISEI GGALNNYGMF GPRFDDRLDG RFGMMDAMSA LMRRRMAEMS SNPVFDPNAA
101: WASTTQGRPS PIGPRLIFGS NMPAQGSEDS GVNVLVRGGR RIGADRPNFS GFLVGGPSLE ALFEQLLLQT GNRQGPAPAP QSAIDSMPVV RITRRHLSDD
201: PVCPVCTDRF EVGSEAREMP CKHLYHASCI IPWLVQHNSC PVCRHPLPPQ RGSDNNAARP QPSAHASEAV NRGVTGAGAD PGPVTRNGGD DRGSPFSFLW
301: PFGSSSPGPS SYQYGGGGGE PAPAVYNDDP GQITYSEWHY DP

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.