Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G316300.1 | Wheat | nucleus | 99.4 | 99.4 |
| HORVU1Hr1G068950.2 | Barley | golgi | 95.18 | 81.87 |
| Os05t0488800-01 | Rice | nucleus | 75.3 | 77.4 |
| Zm00001d010635_P001 | Maize | nucleus | 64.16 | 68.27 |
| Zm00001d038528_P001 | Maize | cytosol | 68.07 | 67.87 |
| KXG22238 | Sorghum | plastid | 75.3 | 64.27 |
| GSMUA_Achr11P... | Banana | nucleus | 36.75 | 45.19 |
| CDY46577 | Canola | nucleus | 35.24 | 40.21 |
| CDY10554 | Canola | cytosol | 35.84 | 39.02 |
| KRG97316 | Soybean | nucleus | 39.16 | 37.79 |
| CDY26096 | Canola | nucleus | 33.43 | 37.76 |
| CDY56022 | Canola | nucleus | 34.94 | 37.06 |
| Bra027436.1-P | Field mustard | nucleus | 34.34 | 36.89 |
| CDY43991 | Canola | nucleus | 34.34 | 36.89 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 40.66 | 36.68 |
| Bra030854.1-P | Field mustard | nucleus | 34.34 | 36.54 |
| AT3G13430.2 | Thale cress | nucleus | 34.64 | 36.51 |
| AT1G55530.2 | Thale cress | nucleus | 37.65 | 35.61 |
| PGSC0003DMT400046527 | Potato | nucleus | 37.95 | 35.0 |
| Bra037109.1-P | Field mustard | nucleus | 34.94 | 34.73 |
| CDY08249 | Canola | cytosol | 34.94 | 34.63 |
| Bra002823.1-P | Field mustard | nucleus | 36.45 | 34.38 |
| CDY32791 | Canola | nucleus | 36.45 | 34.38 |
| AT5G56340.1 | Thale cress | nucleus | 40.96 | 34.34 |
| CDX92768 | Canola | nucleus | 31.63 | 33.98 |
| CDY56080 | Canola | cytosol | 28.92 | 33.8 |
| CDX89343 | Canola | cytosol, mitochondrion | 34.64 | 32.67 |
| AT4G26400.1 | Thale cress | nucleus | 34.94 | 32.58 |
| CDX92770 | Canola | nucleus | 31.63 | 32.41 |
| CDY42740 | Canola | nucleus | 31.33 | 32.3 |
| Bra019109.1-P | Field mustard | nucleus | 31.02 | 31.99 |
| Solyc01g050040.2.1 | Tomato | nucleus | 28.01 | 31.85 |
| Bra026444.1-P | Field mustard | nucleus | 35.54 | 31.81 |
| Bra037999.1-P | Field mustard | nucleus | 27.41 | 31.38 |
| CDY50031 | Canola | cytosol | 27.41 | 31.38 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 37.95 | 31.19 |
| CDY28208 | Canola | cytosol | 21.39 | 30.6 |
| Bra011215.1-P | Field mustard | cytosol | 21.39 | 30.6 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 31.63 | 30.17 |
| CDX94342 | Canola | mitochondrion, nucleus | 34.64 | 29.72 |
| CDY56081 | Canola | nucleus | 21.39 | 29.71 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 31.63 | 28.53 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 27.41 | 27.58 |
| KRH70139 | Soybean | nucleus | 25.3 | 26.33 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 21.99 | 25.26 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 24.4 | 25.16 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 25.6 | 22.97 |
| TraesCS4D01G209500.1 | Wheat | plastid | 19.28 | 22.86 |
| Bra028935.1-P | Field mustard | nucleus | 38.86 | 22.71 |
| TraesCS7D01G246300.1 | Wheat | plastid | 16.87 | 20.82 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 23.19 | 19.95 |
| CDY11934 | Canola | nucleus | 38.86 | 19.79 |
| CDY23599 | Canola | golgi, mitochondrion | 34.94 | 19.05 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 18.07 | 18.87 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 18.67 | 18.13 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 17.47 | 18.12 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 21.69 | 17.91 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.57 | 16.87 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 16.87 | 16.09 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 19.28 | 12.6 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G305300.1 | EnsemblPlantsGene:TraesCS1D01G305300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:402833213..402835738
Molecular Weight (calculated)
36659.8 Da
IEP (calculated)
4.058
GRAVY (calculated)
-0.718
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEADITRYW CHECQQAVEE AMVEELKCPL CDGGFVEEMT VEQVEALTEQ GATQWDPLDN PFEQAGSPGD SDDEDNSDIG REFEGFIRRH RRASALRRVL
101: DSIHDDLRDD RERDNSVLIS AFNQALALQG AALDPDEDRG DHGNANNDDG LLDEYVLGAG LSLLLQHLAE NDPSRYGTPP TKKEAVEALP TVKIEEVVSC
201: SVCLDDLDIG SQAKQLPCEH KFHSPCILPW LELHSSCPVC RFELPSDETK DLSEPSNVDR IESSHEEARA DGPGNNGEDS NTNDREDSNR PWALVPWFNG
301: LFSTPEPQTV RATLTDQQLP PASGTNPNAG HS
101: DSIHDDLRDD RERDNSVLIS AFNQALALQG AALDPDEDRG DHGNANNDDG LLDEYVLGAG LSLLLQHLAE NDPSRYGTPP TKKEAVEALP TVKIEEVVSC
201: SVCLDDLDIG SQAKQLPCEH KFHSPCILPW LELHSSCPVC RFELPSDETK DLSEPSNVDR IESSHEEARA DGPGNNGEDS NTNDREDSNR PWALVPWFNG
301: LFSTPEPQTV RATLTDQQLP PASGTNPNAG HS
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.