Factsheet for Bra002823.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32791	Canola	nucleus	99.15	99.15
AT5G56340.1	Thale cress	nucleus	80.4	71.46
Bra019109.1-P	Field mustard	nucleus	54.55	59.63
Bra026444.1-P	Field mustard	nucleus	57.39	54.45
KRG97316	Soybean	nucleus	52.27	53.49
VIT_06s0004g00120.t01	Wine grape	nucleus	54.26	51.9
Bra028935.1-P	Field mustard	nucleus	80.4	49.82
GSMUA_Achr11P...	Banana	nucleus	37.78	49.26
PGSC0003DMT400046527	Potato	nucleus	50.28	49.17
Bra027436.1-P	Field mustard	nucleus	42.33	48.22
Bra037109.1-P	Field mustard	nucleus	43.75	46.11
Bra030854.1-P	Field mustard	nucleus	39.49	44.55
Os03t0812200-01	Rice	nucleus	42.05	40.11
Zm00001d010635_P001	Maize	nucleus	34.66	39.1
Solyc01g050040.2.1	Tomato	nucleus	32.39	39.04
Bra037999.1-P	Field mustard	nucleus	32.1	38.97
Os05t0488800-01	Rice	nucleus	34.66	37.77
Zm00001d013005_P002	Maize	nucleus	39.77	37.74
Bra011215.1-P	Field mustard	cytosol	24.43	37.07
Zm00001d038528_P001	Maize	cytosol	34.94	36.94
TraesCS1B01G316300.1	Wheat	nucleus	34.38	36.45
TraesCS1D01G305300.1	Wheat	nucleus	34.38	36.45
TraesCS5B01G480100.1	Wheat	nucleus	41.48	36.32
KXG37275	Sorghum	nucleus	39.49	36.29
Bra001767.1-P	Field mustard	nucleus	21.88	35.98
TraesCS5D01G480800.1	Wheat	nucleus	41.19	35.89
TraesCS5A01G467700.1	Wheat	nucleus	40.91	35.64
HORVU5Hr1G111530.1	Barley	nucleus	40.06	35.43
KXG22238	Sorghum	plastid	36.08	32.65
Bra014684.1-P	Field mustard	nucleus	17.33	31.77
HORVU1Hr1G068950.2	Barley	golgi	34.66	31.61
Bra004589.1-P	Field mustard	nucleus	20.74	29.92
Bra007253.1-P	Field mustard	mitochondrion, nucleus	24.72	28.06
Bra000207.1-P	Field mustard	mitochondrion, nucleus	25.0	27.76
Bra038246.1-P	Field mustard	nucleus	25.57	27.69
Bra035835.1-P	Field mustard	nucleus	25.28	27.22
Bra030136.1-P	Field mustard	cytosol	16.76	24.38
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.02	22.77
Bra037800.1-P	Field mustard	cytosol	19.03	22.19
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	22.73	21.45
Bra002559.1-P	Field mustard	plastid	23.58	20.91
Bra006709.1-P	Field mustard	plastid	23.3	20.87
Bra020313.1-P	Field mustard	plastid	22.73	20.57
Bra000143.1-P	Field mustard	nucleus	21.02	19.73
Bra005020.1-P	Field mustard	nucleus, plastid	18.75	19.35
Bra005970.1-P	Field mustard	cytosol	14.77	17.93
Bra014266.1-P	Field mustard	nucleus	21.02	16.78
Bra008671.1-P	Field mustard	nucleus	12.5	15.33
Bra009323.1-P	Field mustard	cytosol	15.62	14.51
Bra021467.1-P	Field mustard	nucleus	15.62	14.1
Bra013006.1-P	Field mustard	nucleus	15.06	12.71
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	13.64	12.09

Protein Annotations

EnsemblPlants:Bra002823.1	EnsemblPlants:Bra002823.1-P	EnsemblPlantsGene:Bra002823	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002544A19	UniProt:M4CF41
MapMan:35.1	:	:	:	:	:

Description

AT4G26400 (E=6e-076) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:+:7348491..7349549

Molecular Weight (calculated)

39496.0 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.705

Length

352 amino acids

Sequence
(BLAST)

001: MEETMAARYW CHMCSQMVNP VTESEIKCPF CQSGFIEEMS SNGNGSGVQD PGTDRAMSLW APVLLGMMST PRRPRRFRRA ELEFDEEEEE EDNDNDVYRH
101: HLARRHGGEI DLDREFESLL RRRRRSSGNN ILQLLQGIRA GIASEYDTSD DRESNRVIMI NPLNQSLVVQ GQQAQSSHHP ALTSLGDYFI GPGLDLLLQH
201: LAENDPNRQG TPPARKEVVD ALPTVKITDP LLQCSVCLDE FEKGVEEEAK EMPCKHKFHV KCIVPWLELH SSCPVCRFEL PSADGDGSKV ESERPTRTRT
301: TVPESSNGNV IENVEGNGRE DDARSGNGRR FSFSWPFSGF FSSSSSSSGS SR

Best Arabidopsis Sequence Match ( AT5G56340.1 )
(BLAST)

001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR

Arabidopsis Description

ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.