Factsheet for Zm00001d013005_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37275	Sorghum	nucleus	89.22	86.42
Os03t0812200-01	Rice	nucleus	69.0	69.38
HORVU5Hr1G111530.1	Barley	nucleus	66.31	61.81
TraesCS5D01G480800.1	Wheat	nucleus	66.85	61.39
TraesCS5B01G480100.1	Wheat	nucleus	66.31	61.19
TraesCS5A01G467700.1	Wheat	nucleus	66.04	60.64
GSMUA_Achr11P...	Banana	nucleus	32.61	44.81
CDY46577	Canola	nucleus	35.04	44.67
VIT_06s0004g00120.t01	Wine grape	nucleus	41.24	41.58
KRG97316	Soybean	nucleus	38.54	41.57
CDX92768	Canola	nucleus	33.96	40.78
CDY10554	Canola	cytosol	33.42	40.66
Zm00001d010635_P001	Maize	nucleus	33.96	40.38
AT3G13430.2	Thale cress	nucleus	34.23	40.32
PGSC0003DMT400046527	Potato	nucleus	39.08	40.28
CDY56022	Canola	nucleus	33.96	40.26
Bra030854.1-P	Field mustard	nucleus	33.69	40.06
Bra027436.1-P	Field mustard	nucleus	33.15	39.81
CDY43991	Canola	nucleus	33.15	39.81
Bra002823.1-P	Field mustard	nucleus	37.74	39.77
CDY32791	Canola	nucleus	37.47	39.49
AT1G55530.2	Thale cress	nucleus	36.93	39.03
CDX92770	Canola	nucleus	33.96	38.89
CDY42740	Canola	nucleus	33.15	38.2
AT5G56340.1	Thale cress	nucleus	40.7	38.13
Bra019109.1-P	Field mustard	nucleus	32.88	37.89
Zm00001d047560_P001	Maize	cytosol	31.54	37.86
CDY26096	Canola	nucleus	29.92	37.76
CDY56080	Canola	cytosol	28.84	37.68
AT4G26400.1	Thale cress	nucleus	35.85	37.36
Bra037109.1-P	Field mustard	nucleus	33.15	36.83
Bra011215.1-P	Field mustard	cytosol	22.91	36.64
CDY28208	Canola	cytosol	22.91	36.64
Zm00001d038528_P001	Maize	cytosol	32.88	36.64
CDY08249	Canola	cytosol	32.88	36.42
Bra026444.1-P	Field mustard	nucleus	35.31	35.31
Bra037999.1-P	Field mustard	nucleus	27.49	35.17
CDY50031	Canola	cytosol	27.49	35.17
CDY56081	Canola	nucleus	22.64	35.15
CDX89343	Canola	cytosol, mitochondrion	32.61	34.38
Zm00001d008237_P001	Maize	nucleus	32.08	34.1
Zm00001d040445_P001	Maize	nucleus	31.27	33.53
Solyc01g050040.2.1	Tomato	nucleus	26.15	33.22
CDX94342	Canola	mitochondrion, nucleus	33.69	32.3
KRH08483	Soybean	cytosol, nucleus, plastid	25.61	29.5
KRH70139	Soybean	nucleus	25.34	29.47
Zm00001d047476_P001	Maize	mitochondrion	20.75	26.37
Bra028935.1-P	Field mustard	nucleus	38.01	24.82
Zm00001d045625_P001	Maize	cytosol	20.49	24.52
Zm00001d047824_P001	Maize	plastid	17.52	23.38
Zm00001d028590_P001	Maize	plastid	17.25	23.02
CDY11934	Canola	nucleus	38.01	21.63
Zm00001d032646_P001	Maize	cytosol	21.56	21.33
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	22.1	21.3
Zm00001d052154_P001	Maize	mitochondrion	17.79	20.75
CDY23599	Canola	golgi, mitochondrion	33.15	20.2
Zm00001d043183_P001	Maize	plastid	17.25	19.69
Zm00001d035677_P001	Maize	plastid	18.33	19.54
Zm00001d018190_P001	Maize	mitochondrion	17.25	19.22
Zm00001d012564_P001	Maize	mitochondrion	17.52	18.79
Zm00001d031273_P001	Maize	cytosol, plastid	14.29	18.34
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	16.44	17.94
Zm00001d051736_P001	Maize	cytosol	15.9	17.88
Zm00001d011076_P001	Maize	plastid	18.33	17.57
Zm00001d053704_P001	Maize	cytosol	16.71	17.42
Zm00001d046663_P001	Maize	cytosol	13.75	17.11

Protein Annotations

EntrezGene:100282229	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK62076.1	ProteinID:AQK62077.1	ProteinID:AQK62078.1
ProteinID:AQK62079.1	UniProt:B4FQN0	EMBL:BT039418	ncoils:Coil	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00017B834F	EnsemblPlantsGene:Zm00001d013005	EnsemblPlants:Zm00001d013005_P002	EnsemblPlants:Zm00001d013005_T002	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING/U-box superfamily protein

Coordinates

chr5:-:2997319..3000825

Molecular Weight (calculated)

41238.2 Da

IEP (calculated)

4.298

GRAVY (calculated)

-0.820

Length

371 amino acids

Sequence
(BLAST)

001: MDEGQGVRYW CHMCQEVIDP MPEMKCPGCE GGFVEEMDSE DFEPAANARS DRSVSLLAPL LLGMMGGSSR RSRLRREAMV EADADQDDEE DDSDHELELS
101: RRRRRRRRSS ALFSVLEAMR DRDEVRGSDD TDSDTERDLE RGRRERMERQ RERLRQIERV SARGRERTES LILINSNNEA IILQGTFGSD DNQEDSSNTS
201: SGVSLGDYFL GPALDTLLQR LAESDLSRSG TPPAKKEAVA ALPTVNIEEA LGCSVCLEDF EMGGEAKQMP CQHKFHSHCI LPWLELHSSC PICRFQLPTE
301: ETKNNPCESA STAGTVNGGG DNAAASGSDT ESTNHNEDDH SDSPIFSALS TLFSDPFSSD DDESVPHSYE N

Best Arabidopsis Sequence Match ( AT3G13430.2 )
(BLAST)

001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.