Factsheet for Zm00001d047560_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39475	Sorghum	cytosol	92.88	89.41
Os03t0324900-01	Rice	cytosol	64.72	62.5
TraesCS4A01G129800.1	Wheat	cytosol	63.43	60.49
HORVU4Hr1G051610.2	Barley	cytosol	63.11	56.52
TraesCS4B01G174800.1	Wheat	cytosol	63.75	56.29
TraesCS4D01G176700.1	Wheat	cytosol	62.46	55.46
GSMUA_Achr9P05060_001	Banana	nucleus	23.95	39.78
GSMUA_Achr7P18340_001	Banana	nucleus	37.22	38.33
Zm00001d008237_P001	Maize	nucleus	41.75	36.96
GSMUA_Achr5P07680_001	Banana	nucleus	35.6	36.91
GSMUA_Achr6P08590_001	Banana	nucleus	34.63	36.52
Zm00001d040445_P001	Maize	nucleus	40.45	36.13
GSMUA_Achr10P...	Banana	nucleus	33.66	34.32
Zm00001d010635_P001	Maize	nucleus	34.3	33.97
Zm00001d013005_P002	Maize	nucleus	37.86	31.54
Zm00001d038528_P001	Maize	cytosol	32.04	29.73
Zm00001d047476_P001	Maize	mitochondrion	24.6	26.03
Zm00001d045625_P001	Maize	cytosol	25.24	25.16
Zm00001d047824_P001	Maize	plastid	21.04	23.38
Zm00001d028590_P001	Maize	plastid	21.04	23.38
Zm00001d032646_P001	Maize	cytosol	27.83	22.93
Zm00001d043183_P001	Maize	plastid	23.62	22.46
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	27.83	22.34
Zm00001d035677_P001	Maize	plastid	24.27	21.55
Zm00001d012564_P001	Maize	mitochondrion	23.3	20.81
Zm00001d052154_P001	Maize	mitochondrion	20.39	19.81
Zm00001d031273_P001	Maize	cytosol, plastid	18.45	19.72
Zm00001d011076_P001	Maize	plastid	23.62	18.86
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	20.71	18.82
Zm00001d018190_P001	Maize	mitochondrion	20.06	18.62
Zm00001d051736_P001	Maize	cytosol	19.42	18.18
Zm00001d046663_P001	Maize	cytosol	16.83	17.45
Zm00001d053704_P001	Maize	cytosol	15.86	13.76

Protein Annotations

EMBL:EU965176	EnsemblPlants:Zm00001d047560_P001	EnsemblPlants:Zm00001d047560_T001	EnsemblPlantsGene:Zm00001d047560	EntrezGene:100283571	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF2
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:AQL06985.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000182DC8B	UniProt:B6TJL1	MapMan:35.1	:	:

Description

Protein binding protein%3B Putative RING zinc finger domain superfamily protein isoform 1%3B Putative RING zinc finger domain superfamily protein isoform 2

Coordinates

chr9:-:135552770..135553699

Molecular Weight (calculated)

33047.9 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.346

Length

309 amino acids

Sequence
(BLAST)

001: MEEESVAASR YYCHMCSLII RPELGIEEVK CPHCHTGFVE EMAGDRRGSD DAAIRGRPPG GEASSNASDA ALEREVSLWA PVLMDFIAAS SGRHGLDGHG
101: GDLAALARRQ YRNIALLQLL NALQEGDTDA GRERVVLMSP ADARAMLMGQ ERGDGAAALG PGGLTLGDLF LGPGLDLLLE YLAETDPNRQ GTPPARKEAV
201: AALPTVRVRE DFTCPVCLDE VAGGGDAREM PCKHRFHDQC ILPWLEMHSS CPVCRHQLPT EEPAEAIGSD RGAGVESSGN ARGGGRRHWF SWPFGGLFSQ
301: RSSGNSSSS

Best Arabidopsis Sequence Match ( AT5G56340.1 )
(BLAST)

001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR

Arabidopsis Description

ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.