Factsheet for Zm00001d053704_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033980_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Zm00001d033980_P001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	77.53	71.32
Os02t0191500-01	Rice	nucleus	39.33	37.33
Zm00001d031273_P001	Maize	cytosol, plastid	17.98	22.15
Zm00001d046663_P001	Maize	cytosol	16.85	20.13
Zm00001d028590_P001	Maize	plastid	15.45	19.78
TraesCS6D01G160300.1	Wheat	nucleus	19.1	19.54
Zm00001d047824_P001	Maize	plastid	15.17	19.42
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	19.94	19.19
CDX69496	Canola	cytosol	15.17	18.75
Zm00001d051736_P001	Maize	cytosol	17.13	18.48
Bra008671.1-P	Field mustard	nucleus	14.89	18.47
KRH18313	Soybean	nucleus	19.1	18.18
CDX78323	Canola	cytosol	14.61	18.06
Zm00001d047476_P001	Maize	mitochondrion	14.61	17.81
TraesCS6B01G198800.1	Wheat	nucleus	19.94	17.71
CDX90972	Canola	cytosol	16.57	17.61
Bra005970.1-P	Field mustard	cytosol	14.33	17.59
Zm00001d035677_P001	Maize	plastid	17.13	17.53
CDY69134	Canola	cytosol	14.33	17.53
Zm00001d045625_P001	Maize	cytosol	14.89	17.1
CDY34722	Canola	cytosol	18.54	16.92
CDY26465	Canola	cytosol	16.01	16.81
Zm00001d013005_P002	Maize	nucleus	17.42	16.71
CDY34721	Canola	cytosol	18.26	16.67
AT5G15820.1	Thale cress	cytosol	16.29	16.67
Bra021467.1-P	Field mustard	nucleus	18.26	16.67
KRH56750	Soybean	cytosol	16.01	16.67
KRG93748	Soybean	nucleus, plastid	17.7	16.58
CDX85531	Canola	cytosol	15.73	16.33
Solyc02g089410.2.1	Tomato	nucleus	14.89	16.21
Zm00001d040445_P001	Maize	nucleus	15.73	16.18
KRH03189	Soybean	nucleus	16.01	16.06
Zm00001d008237_P001	Maize	nucleus	15.73	16.05
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	17.7	15.87
Zm00001d047560_P001	Maize	cytosol	13.76	15.86
PGSC0003DMT400068309	Potato	cytosol	17.7	15.83
Zm00001d011076_P001	Maize	plastid	17.13	15.76
VIT_14s0083g00710.t01	Wine grape	nucleus	17.13	15.6
Zm00001d010635_P001	Maize	nucleus	13.48	15.38
PGSC0003DMT400003515	Potato	nucleus	16.01	15.36
AT5G08139.1	Thale cress	cytosol	16.01	15.16
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	16.29	15.06
Zm00001d038528_P001	Maize	cytosol	14.04	15.02
CDX69973	Canola	cytosol	15.17	15.0
Zm00001d032646_P001	Maize	cytosol	15.73	14.93
AT3G02340.2	Thale cress	cytosol	17.13	14.91
CDY21513	Canola	cytosol	14.89	14.89
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	16.57	14.86
Zm00001d043183_P001	Maize	plastid	13.48	14.77
GSMUA_Achr8P24510_001	Banana	cytosol	16.29	14.65
VIT_17s0000g04730.t01	Wine grape	nucleus	17.98	14.58
PGSC0003DMT400063293	Potato	nucleus	17.42	14.35
Bra009323.1-P	Field mustard	cytosol	15.17	14.25
Zm00001d052154_P001	Maize	mitochondrion	12.64	14.15
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	13.48	14.12
CDY02194	Canola	peroxisome	15.73	14.07
Zm00001d012564_P001	Maize	mitochondrion	13.48	13.87
Zm00001d018190_P001	Maize	mitochondrion	12.92	13.81
CDY51628	Canola	peroxisome	15.73	13.79
Bra013006.1-P	Field mustard	nucleus	15.73	13.43
Solyc03g114680.2.1	Tomato	nucleus	18.54	13.25
AT5G60820.1	Thale cress	cytosol	15.45	13.13
GSMUA_Achr3P06300_001	Banana	cytosol	18.82	12.84

Protein Annotations

EnsemblPlants:Zm00001d053704_P001	EnsemblPlants:Zm00001d053704_T001	EnsemblPlantsGene:Zm00001d053704	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	ProteinID:AQK60186.1
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00084438DF	UniProt:A0A1D6QRR8	MapMan:35.1

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr4:-:239601161..239602231

Molecular Weight (calculated)

37501.6 Da

IEP (calculated)

3.825

GRAVY (calculated)

-0.376

Length

356 amino acids

Sequence
(BLAST)

001: MAGIAGDDPF GFDSDSDSGD DGPVCYDPFE DCDGDGDEDE DAGLVGGHFA LSYGGGGQYR ISDFAFRGGE GDGGDVLVGQ RQGPLSSHDE PILETLGRSF
101: DSDGGLSQFY PHLFPASQLV EDTSGEEEEE EEMISRNALG GVGSEFERGA VDEETADDDE DGIVLMLNGF TLDSGPPVGG FQGPVDAVEE ATSDDDVGEV
201: GGLMLSGFDL RAPAPHATRP FRMVVGGEDT DSDDADLNLV DALARRVREA TRRLPASRAV VDGLPEVALS DQEASHGCAV CKDAVVAGQS VLRLPCNHYF
301: HGECIRPWLA IRNTCPVCRF QLPTGDAAEY DSPRSTTGGV VVSVPQQHSA PAQVCY

Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)

001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA

Arabidopsis Description

AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.