Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02194 | Canola | peroxisome | 72.79 | 76.63 |
| CDY51628 | Canola | peroxisome | 73.51 | 75.86 |
| Bra013006.1-P | Field mustard | nucleus | 73.27 | 73.62 |
| AT5G08139.1 | Thale cress | cytosol | 41.53 | 46.28 |
| KRH56750 | Soybean | cytosol | 31.74 | 38.89 |
| KRH03189 | Soybean | nucleus | 32.22 | 38.03 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 37.47 | 35.76 |
| PGSC0003DMT400063293 | Potato | nucleus | 34.84 | 33.8 |
| Solyc03g114680.2.1 | Tomato | nucleus | 34.61 | 29.12 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 8.35 | 28.23 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 22.67 | 23.99 |
| Os08t0487500-01 | Rice | plastid | 14.8 | 22.88 |
| AT3G02340.2 | Thale cress | cytosol | 21.72 | 22.25 |
| TraesCS7D01G246300.1 | Wheat | plastid | 13.6 | 21.19 |
| TraesCS7B01G144100.1 | Wheat | plastid | 13.6 | 21.19 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 14.56 | 21.11 |
| EES14331 | Sorghum | plastid | 14.56 | 20.82 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 13.37 | 20.82 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 14.56 | 19.87 |
| AT5G15820.1 | Thale cress | cytosol | 16.23 | 19.54 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 14.08 | 18.97 |
| Zm00001d046663_P001 | Maize | cytosol | 13.13 | 18.46 |
| OQU85475 | Sorghum | cytosol | 14.08 | 18.44 |
| AT2G40830.4 | Thale cress | mitochondrion | 14.32 | 18.29 |
| AT5G64920.1 | Thale cress | cytosol | 14.56 | 18.26 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 13.37 | 18.24 |
| Zm00001d051736_P001 | Maize | cytosol | 14.32 | 18.18 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 22.43 | 18.01 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 16.95 | 17.97 |
| EER90075 | Sorghum | nucleus | 12.89 | 17.82 |
| AT3G56580.1 | Thale cress | mitochondrion | 13.37 | 17.5 |
| AT1G60360.1 | Thale cress | nucleus | 12.89 | 16.51 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 13.84 | 15.93 |
| AT3G13430.2 | Thale cress | nucleus | 11.93 | 15.87 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 12.89 | 15.52 |
| Zm00001d053704_P001 | Maize | cytosol | 13.13 | 15.45 |
| AT4G26400.1 | Thale cress | nucleus | 13.13 | 15.45 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 14.08 | 15.25 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 11.69 | 15.03 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 11.69 | 14.85 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 11.69 | 14.8 |
| AT5G56340.1 | Thale cress | nucleus | 13.84 | 14.65 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 12.89 | 14.59 |
| AT1G55530.2 | Thale cress | nucleus | 12.17 | 14.53 |
| AT2G39720.2 | Thale cress | nucleus | 13.37 | 13.97 |
| Os02t0191500-01 | Rice | nucleus | 12.41 | 13.87 |
| AT3G19950.2 | Thale cress | cytosol | 12.65 | 13.73 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 12.65 | 13.22 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 15.75 | 12.89 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 11.69 | 12.79 |
| AT5G01980.1 | Thale cress | nucleus | 13.6 | 11.56 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:836203 | UniProt:A0A178U9F0 | ProteinID:AED97383.1 | ArrayExpress:AT5G60820 |
| EnsemblPlantsGene:AT5G60820 | RefSeq:AT5G60820 | TAIR:AT5G60820 | RefSeq:AT5G60820-TAIR-G | EnsemblPlants:AT5G60820.1 | TAIR:AT5G60820.1 |
| ProteinID:BAB10102.1 | ncoils:Coil | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_200890.1 |
| ProteinID:OAO89752.1 | PFAM:PF13639 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR44290 | UniProt:Q9FJH4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000009FDAD |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FJH4]
Coordinates
chr5:+:24469561..24471208
Molecular Weight (calculated)
47705.9 Da
IEP (calculated)
3.650
GRAVY (calculated)
-0.572
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEMSYLQID DANDAVFNHY RHQRRLHDHL RDQSFSQILY PLPHWIQSDD GDLYISETDF SSGDVSVSDL VFTTDDGLDL LDRRSFVMDL FHQRVEQSQV
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.