Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g04420.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | VIT_05s0020g04420.t01 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56750 | Soybean | cytosol | 36.67 | 47.08 |
| KRH03189 | Soybean | nucleus | 36.67 | 45.35 |
| PGSC0003DMT400063293 | Potato | nucleus | 43.28 | 43.98 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 11.85 | 41.94 |
| CDY02194 | Canola | peroxisome | 35.76 | 39.45 |
| Bra013006.1-P | Field mustard | nucleus | 36.67 | 38.61 |
| CDY51628 | Canola | peroxisome | 35.54 | 38.42 |
| Solyc03g114680.2.1 | Tomato | nucleus | 43.28 | 38.15 |
| AT5G08139.1 | Thale cress | cytosol | 32.35 | 37.77 |
| AT5G60820.1 | Thale cress | cytosol | 35.76 | 37.47 |
| CDX69973 | Canola | cytosol | 29.84 | 36.39 |
| CDY21513 | Canola | cytosol | 29.16 | 35.96 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 31.89 | 35.81 |
| Bra009323.1-P | Field mustard | cytosol | 30.07 | 34.83 |
| CDY69134 | Canola | cytosol | 23.01 | 34.71 |
| Bra005970.1-P | Field mustard | cytosol | 22.32 | 33.79 |
| CDX78323 | Canola | cytosol | 21.87 | 33.33 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 29.61 | 32.83 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 18.22 | 26.06 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 18.22 | 25.72 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 30.52 | 25.67 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 17.77 | 25.41 |
| OQU85475 | Sorghum | cytosol | 18.45 | 25.31 |
| TraesCS7B01G144100.1 | Wheat | plastid | 15.49 | 25.28 |
| Os08t0487500-01 | Rice | plastid | 15.49 | 25.09 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.26 | 24.91 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 15.26 | 24.91 |
| Zm00001d051736_P001 | Maize | cytosol | 18.22 | 24.24 |
| EES14331 | Sorghum | plastid | 15.03 | 22.53 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 14.81 | 22.49 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 18.22 | 21.98 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 16.63 | 21.86 |
| Zm00001d046663_P001 | Maize | cytosol | 14.81 | 21.81 |
| EER90075 | Sorghum | nucleus | 14.81 | 21.45 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 14.12 | 18.73 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 13.9 | 18.71 |
| Os02t0191500-01 | Rice | nucleus | 15.95 | 18.67 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.4 | 18.6 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 13.9 | 18.48 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 13.21 | 18.47 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 14.58 | 18.39 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 10.93 | 18.39 |
| Zm00001d053704_P001 | Maize | cytosol | 14.58 | 17.98 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 15.03 | 17.84 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 15.26 | 17.36 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 13.21 | 17.26 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 14.35 | 17.07 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 12.76 | 16.82 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 14.35 | 16.45 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 14.81 | 16.21 |
| VIT_17s0000g08400.t01 | Wine grape | nucleus | 5.24 | 16.08 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 13.44 | 16.03 |
| VIT_08s0007g00720.t01 | Wine grape | plastid | 14.81 | 12.6 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 15.26 | 11.36 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 11.39 | 11.09 |
Protein Annotations
| EntrezGene:100268065 | wikigene:100268065 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB43165 | ProteinID:CCB43165.1 |
| UniProt:F6GTF6 | EMBL:FN594950 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100268065 |
| wikigene:LOC100268065 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00015C993B | ArrayExpress:VIT_17s0000g04730 | EnsemblPlantsGene:VIT_17s0000g04730 | EnsemblPlants:VIT_17s0000g04730.t01 | unigene:Vvi.18048 | RefSeq:XP_002273441 |
| RefSeq:XP_002273441.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:-:5126163..5127854
Molecular Weight (calculated)
49337.3 Da
IEP (calculated)
3.893
GRAVY (calculated)
-0.524
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVSYLLHL HEDEEDHDHA PEHIDTLDSL PYWGLHDFDS FNVFVSDHPP IAVHTRDLFQ TRPERSLHVR AVDDISEPDS ITNVDLLDRE NQVNFVLNLF
101: HQRVEQSHVM GETDLVSETL DDSGFGVIEG NDETGSTYLD LDLGLGFGAE TNCLGVENCD FFVSRRVSGS ESGESSTVSA AEPFGSSVGY VGFESDSDED
201: GNALEGIDLQ AEDDFRLDQA HDDDTSIRLC WDSLQLDDHR ETNEDFEWEE VDDVIDEREV LNMVLGPDEE GPIPLLPVGE PVEVDVGREE NMVSLDWEVL
301: LAVGNLDRTL EIEHDSEPYL ADHYDYIYTS EYDMLFGQFA ENENALTGRP PASKSVVKNL PVVVLTQGDV ENNNALCAVC KDEINVGELA KQLPCSHRYH
401: GDCIMPWLGI RNTCPVCRYE LPTDDPQYEQ RRNRRAGGQ
101: HQRVEQSHVM GETDLVSETL DDSGFGVIEG NDETGSTYLD LDLGLGFGAE TNCLGVENCD FFVSRRVSGS ESGESSTVSA AEPFGSSVGY VGFESDSDED
201: GNALEGIDLQ AEDDFRLDQA HDDDTSIRLC WDSLQLDDHR ETNEDFEWEE VDDVIDEREV LNMVLGPDEE GPIPLLPVGE PVEVDVGREE NMVSLDWEVL
301: LAVGNLDRTL EIEHDSEPYL ADHYDYIYTS EYDMLFGQFA ENENALTGRP PASKSVVKNL PVVVLTQGDV ENNNALCAVC KDEINVGELA KQLPCSHRYH
401: GDCIMPWLGI RNTCPVCRYE LPTDDPQYEQ RRNRRAGGQ
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.