Factsheet for VIT_12s0034g01400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01390.t01	Wine grape	mitochondrion	90.42	52.33
GSMUA_Achr7P13060_001	Banana	mitochondrion	31.42	33.33
VIT_18s0001g03270.t01	Wine grape	nucleus	36.78	28.83
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.78	28.24
HORVU0Hr1G019650.1	Barley	mitochondrion	33.72	27.76
Zm00001d052154_P001	Maize	mitochondrion	33.72	27.67
Os02t0767600-00	Rice	mitochondrion	34.48	27.44
TraesCS7B01G074800.1	Wheat	mitochondrion	33.72	27.33
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	33.33	27.27
TraesCS7D01G170800.1	Wheat	mitochondrion	33.33	27.19
TraesCS6D01G309800.1	Wheat	mitochondrion	32.95	27.04
EER89401	Sorghum	mitochondrion, nucleus	34.48	26.95
PGSC0003DMT400061055	Potato	extracellular	30.65	26.85
Zm00001d018190_P001	Maize	mitochondrion	34.1	26.73
TraesCS6A01G330700.1	Wheat	mitochondrion	32.95	26.38
Solyc01g104260.2.1	Tomato	mitochondrion	29.89	26.0
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	32.95	25.83
KRH44018	Soybean	mitochondrion	30.65	25.24
TraesCS6B01G361600.1	Wheat	mitochondrion	32.57	25.22
KXG31176	Sorghum	plastid	33.33	24.44
KRH10441	Soybean	mitochondrion	29.89	24.3
VIT_08s0040g00590.t01	Wine grape	nucleus	28.74	23.89
VIT_06s0009g02350.t01	Wine grape	mitochondrion	27.97	21.73
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	30.65	20.73
VIT_17s0000g08400.t01	Wine grape	nucleus	10.34	18.88
VIT_17s0053g00320.t01	Wine grape	plastid	26.44	18.7
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	22.61	17.66
VIT_06s0004g00120.t01	Wine grape	nucleus	23.37	16.58
VIT_08s0007g00720.t01	Wine grape	plastid	26.44	13.37
VIT_14s0083g00710.t01	Wine grape	nucleus	19.16	12.79
VIT_17s0000g04730.t01	Wine grape	nucleus	18.39	10.93
VIT_08s0056g00320.t01	Wine grape	mitochondrion	21.46	9.49

Protein Annotations

EntrezGene:100265241	wikigene:100265241	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB48712	ProteinID:CCB48712.1
UniProt:F6H965	EMBL:FN595497	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100265241
wikigene:LOC100265241	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44290	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00015CAE0F	ArrayExpress:VIT_12s0034g01400	EnsemblPlantsGene:VIT_12s0034g01400	EnsemblPlants:VIT_12s0034g01400.t01	RefSeq:XP_002272258	RefSeq:XP_002272258.2
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:17414404..17415189

Molecular Weight (calculated)

29716.6 Da

IEP (calculated)

7.278

GRAVY (calculated)

-0.501

Length

261 amino acids

Sequence
(BLAST)

001: MRTYHYYWCQ HCQRTVRIAS GNLSEILLCP FCSCRLQYEF HAPRQRLVPT FTGLGVLAAE LLEDMDVILL PRRPQTTGLN GVLWGTEMRI PSINVPSRVG
101: RHLRRPPRPR RPVAAPENVA APRVGGSNFT MRDVLNEAME ELTHNEVTGE NTQNDRPGPP PAAPSAIEAL PSVRLTPTHL RNDPCCPVCK EEYQAGEEVR
201: EMPCKHMYHS DCIVPWLRIH NSCPVCRHEL EASPNPHAVH NTRAENFDVE EVTNRLVWPW N

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.