Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 94.97 | 92.64 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 91.51 | 86.35 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 88.05 | 84.08 |
| Zm00001d052154_P001 | Maize | mitochondrion | 67.3 | 67.3 |
| Os02t0767600-00 | Rice | mitochondrion | 68.24 | 66.16 |
| Zm00001d018190_P001 | Maize | mitochondrion | 67.3 | 64.26 |
| KXG31176 | Sorghum | plastid | 69.5 | 62.08 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 45.28 | 58.54 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 47.17 | 46.88 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 35.85 | 34.23 |
| CDX74533 | Canola | cytosol | 30.82 | 33.56 |
| Solyc11g012950.1.1 | Tomato | cytosol | 34.59 | 33.03 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 27.04 | 32.95 |
| PGSC0003DMT400002370 | Potato | cytosol | 33.33 | 32.82 |
| CDY01669 | Canola | plastid | 31.45 | 30.96 |
| AT1G60360.1 | Thale cress | nucleus | 31.76 | 30.89 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 31.45 | 30.77 |
| KRH64713 | Soybean | nucleus | 33.33 | 30.11 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 25.47 | 28.03 |
| PGSC0003DMT400061055 | Potato | extracellular | 25.16 | 26.85 |
| TraesCS4D01G209500.1 | Wheat | plastid | 23.27 | 26.43 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 24.84 | 26.33 |
| KRH44018 | Soybean | mitochondrion | 25.16 | 25.24 |
| KRH10441 | Soybean | mitochondrion | 25.47 | 25.23 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 25.16 | 24.24 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 26.1 | 22.43 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 28.3 | 22.39 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 26.42 | 21.76 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 22.96 | 21.34 |
| TraesCS7D01G246300.1 | Wheat | plastid | 17.92 | 21.19 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 28.3 | 19.96 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 22.33 | 19.29 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 18.87 | 18.07 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.35 | 15.95 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 17.3 | 15.8 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 19.81 | 15.59 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 14.15 | 12.93 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 17.92 | 11.22 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G309800.1 | EnsemblPlantsGene:TraesCS6D01G309800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6D:-:420014750..420015971
Molecular Weight (calculated)
35517.0 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.704
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPVYGGEVR QRTCRMYWCY QCARALRIIS YPATDVFCPR CYGRFLHEID PPPRPALPPP GYFPHHFAPH PHAYYHDGNP RRWVVYGAAP TVPGRPFRQL
101: PPPAPAPTPP PRRRMPSPPP APVARRPSTP PAIDPGDYFT GGDLNRLVEE LTQNDRPGPA PAPSSAIDSL PTVRIAAQHL SDDGGSQCPV CKEEFELGEA
201: ARQLPCKHVY HSDCIVPWLR LHNSCPVCRF KLPGTGAASS TRRASGSNGA RNRDRERERE PATTVRWGPL SWMVPARGTE EPDDGWEYGR RAHGRGHGRP
301: EDGDAGAFYA WWRSLFLL
101: PPPAPAPTPP PRRRMPSPPP APVARRPSTP PAIDPGDYFT GGDLNRLVEE LTQNDRPGPA PAPSSAIDSL PTVRIAAQHL SDDGGSQCPV CKEEFELGEA
201: ARQLPCKHVY HSDCIVPWLR LHNSCPVCRF KLPGTGAASS TRRASGSNGA RNRDRERERE PATTVRWGPL SWMVPARGTE EPDDGWEYGR RAHGRGHGRP
301: EDGDAGAFYA WWRSLFLL
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.