Factsheet for TraesCS5D01G146400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G144700.1	Wheat	nucleus	96.65	96.27
TraesCS5A01G145800.1	Wheat	nucleus	96.65	96.27
Os11t0119200-01	Rice	nucleus	65.35	67.62
Os12t0118700-01	Rice	nucleus	65.35	66.53
GSMUA_Achr4P02460_001	Banana	nucleus	33.27	40.82
Bra014266.1-P	Field mustard	nucleus	30.32	34.92
AT5G01980.1	Thale cress	nucleus	33.66	34.69
CDY03622	Canola	nucleus	30.32	34.53
CDY58938	Canola	nucleus	29.92	34.47
KRH40635	Soybean	nucleus, plastid	35.24	32.49
PGSC0003DMT400071362	Potato	nucleus	30.12	32.35
VIT_08s0056g00320.t01	Wine grape	mitochondrion	37.4	32.2
KRH00522	Soybean	plastid	35.04	31.84
GSMUA_Achr11P...	Banana	cytosol	41.14	28.83
CDY01221	Canola	cytosol	11.61	27.06
TraesCS3D01G432800.1	Wheat	mitochondrion	14.37	25.26
TraesCS4D01G209500.1	Wheat	plastid	12.01	21.79
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	15.75	21.62
TraesCS7D01G246300.1	Wheat	plastid	10.83	20.45
TraesCS7D01G000400.1	Wheat	cytosol	13.19	20.3
TraesCS1D01G305300.1	Wheat	nucleus	12.6	19.28
TraesCS6D01G160300.1	Wheat	nucleus	12.6	18.39
TraesCS7D01G387300.1	Wheat	cytosol	11.61	18.1
TraesCS6D01G309800.1	Wheat	mitochondrion	11.22	17.92
TraesCS3D01G532300.1	Wheat	cytosol	13.58	17.88
TraesCS3D01G324300.1	Wheat	mitochondrion	12.01	17.84
TraesCS1D01G030300.1	Wheat	nucleus	13.98	17.66
TraesCS4D01G176700.1	Wheat	cytosol	11.81	17.24
TraesCS7D01G170800.1	Wheat	mitochondrion	10.63	16.88
TraesCS3D01G192700.1	Wheat	cytosol	11.61	16.03
TraesCS5D01G480800.1	Wheat	nucleus	11.61	14.6

Protein Annotations

EnsemblPlants:TraesCS5D01G146400.1	EnsemblPlantsGene:TraesCS5D01G146400	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:+:233036029..233037555

Molecular Weight (calculated)

56597.6 Da

IEP (calculated)

4.242

GRAVY (calculated)

-0.718

Length

508 amino acids

Sequence
(BLAST)

001: MSGNQTQSSD YERLASQPDA QCLVCTRPFT LDTEVTNSFE ALAICRECKA TVLNDSQRDV TTSTSQQRRQ RRRRSRTASL ESNEDAFSQQ FSQLINLARQ
101: GHEAEIDDPT VVRQLASYNS TPNQSQRWHA SDDESDGLSY ADSVFDELES NISFGDYGGE SDASLGQHSM MGREITIQLD NESYMNTDTD IDPMNAGIDQ
201: WDSDDQEDED VQLEESDFDE AVDAMQQHQQ QSRGIGPSEL TGWESEDGVW TWRSQRANMT NLMAGMEGPD VRAPFVGNPG DYADARQFEM ILEQFAEDDS
301: SRRGAPPAAT SLIGNLPSLV ISTSHEADGG VICPVCKDPM PIRTRAKQLP CMHLYHLSCI LPWLSSRNTC PVCRYELPTD DPESERSERA ATNERDVHGV
401: EEHTHLQEIG EEGSDEPEAE ETQDMFNDAV EVTNTGEHGA HVAEQSNRAR AHRRWLFIAV APAVSFVGLA LVLCFANPTS SGRRRLCRGS QSASAALVDT
501: KRSWWSMF

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.