Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G144100.1 | Wheat | plastid | 96.65 | 96.65 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 96.28 | 96.28 |
| Os08t0487500-01 | Rice | plastid | 71.0 | 70.48 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 62.08 | 57.79 |
| EES14331 | Sorghum | plastid | 62.83 | 57.68 |
| TraesCS4D01G209500.1 | Wheat | plastid | 20.82 | 20.0 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 27.14 | 19.73 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 24.91 | 19.25 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 23.42 | 19.09 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 24.91 | 18.21 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 19.33 | 17.99 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 21.19 | 17.92 |
| KRH56750 | Soybean | cytosol | 22.68 | 17.84 |
| CDX78323 | Canola | cytosol | 18.96 | 17.71 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 21.19 | 17.48 |
| Bra005970.1-P | Field mustard | cytosol | 18.59 | 17.24 |
| CDY69134 | Canola | cytosol | 18.59 | 17.18 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 20.07 | 16.88 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 20.82 | 16.87 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 24.16 | 16.84 |
| Solyc02g089410.2.1 | Tomato | nucleus | 20.45 | 16.82 |
| KRH03189 | Soybean | nucleus | 21.93 | 16.62 |
| KRH18313 | Soybean | nucleus | 22.3 | 16.04 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 23.79 | 15.92 |
| AT5G08139.1 | Thale cress | cytosol | 21.93 | 15.69 |
| Bra008671.1-P | Field mustard | nucleus | 16.73 | 15.68 |
| CDY34722 | Canola | cytosol | 22.68 | 15.64 |
| PGSC0003DMT400003515 | Potato | nucleus | 21.56 | 15.63 |
| CDX69496 | Canola | cytosol | 16.73 | 15.62 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 23.42 | 15.59 |
| KRG93748 | Soybean | nucleus, plastid | 21.93 | 15.53 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 20.07 | 15.52 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 22.68 | 15.4 |
| CDY34721 | Canola | cytosol | 22.3 | 15.38 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 24.91 | 15.26 |
| CDY21513 | Canola | cytosol | 20.07 | 15.17 |
| AT3G02340.2 | Thale cress | cytosol | 23.05 | 15.16 |
| Bra021467.1-P | Field mustard | nucleus | 21.93 | 15.13 |
| CDX69973 | Canola | cytosol | 20.07 | 15.0 |
| AT5G15820.1 | Thale cress | cytosol | 19.33 | 14.94 |
| CDY02194 | Canola | peroxisome | 21.93 | 14.82 |
| CDY26465 | Canola | cytosol | 18.59 | 14.75 |
| Bra009323.1-P | Field mustard | cytosol | 20.07 | 14.25 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 20.82 | 14.11 |
| PGSC0003DMT400068309 | Potato | cytosol | 20.82 | 14.07 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 20.45 | 14.07 |
| CDY51628 | Canola | peroxisome | 21.19 | 14.04 |
| Bra013006.1-P | Field mustard | nucleus | 21.19 | 13.67 |
| AT5G60820.1 | Thale cress | cytosol | 21.19 | 13.6 |
| CDX90972 | Canola | cytosol | 16.73 | 13.43 |
| PGSC0003DMT400063293 | Potato | nucleus | 20.82 | 12.96 |
| CDX85531 | Canola | cytosol | 16.36 | 12.83 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 24.54 | 12.64 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 15.61 | 12.28 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.84 | 12.09 |
| Solyc03g114680.2.1 | Tomato | nucleus | 21.56 | 11.65 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 20.45 | 10.83 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G246300.1 | EnsemblPlantsGene:TraesCS7D01G246300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:215226246..215227340
Molecular Weight (calculated)
29600.1 Da
IEP (calculated)
3.909
GRAVY (calculated)
-0.379
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPYLLHRL TADEIFQTLE ASSSTSSSCY DAFVPVFRPD PSASSLSVSA ADRVRSQFLS VERDLFHDAL VAPRNDDLGF PEENDEEEEA SIRWDCFQLD
101: EEEEPDLPLE GSVPAEEFDW EEVAFASGPL VENPEPDWEM LGDMPPNAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAIVAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EECILPWLEV RNSCPLCRFE LPTDNPKYEN WKAGQAMAA
101: EEEEPDLPLE GSVPAEEFDW EEVAFASGPL VENPEPDWEM LGDMPPNAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAIVAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EECILPWLEV RNSCPLCRFE LPTDNPKYEN WKAGQAMAA
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.