Factsheet for Bra005970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Bra039723.1-P	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78323	Canola	cytosol	95.17	95.83
Bra009323.1-P	Field mustard	cytosol	65.86	50.4
AT5G08139.1	Thale cress	cytosol	64.48	49.73
Os06t0633500-01	Rice	cytosol, nucleus	14.83	34.68
Bra013006.1-P	Field mustard	nucleus	48.97	34.05
KRH56750	Soybean	cytosol	31.72	26.9
KRH03189	Soybean	nucleus	32.76	26.76
Bra001767.1-P	Field mustard	nucleus	16.55	22.43
VIT_17s0000g04730.t01	Wine grape	nucleus	33.79	22.32
PGSC0003DMT400063293	Potato	nucleus	31.72	21.3
GSMUA_Achr8P24510_001	Banana	cytosol	28.28	20.71
Bra008671.1-P	Field mustard	nucleus	20.34	20.56
Bra014684.1-P	Field mustard	nucleus	13.1	19.79
Solyc03g114680.2.1	Tomato	nucleus	33.45	19.48
Bra030136.1-P	Field mustard	cytosol	16.21	19.42
TraesCS6A01G288800.1	Wheat	cytosol, plastid	20.34	19.22
TraesCS7D01G246300.1	Wheat	plastid	17.24	18.59
Os08t0487500-01	Rice	plastid	17.24	18.45
Bra004589.1-P	Field mustard	nucleus	15.52	18.44
TraesCS7A01G247700.1	Wheat	cytosol, plastid	16.9	18.22
Bra021467.1-P	Field mustard	nucleus	24.48	18.21
OQU85475	Sorghum	cytosol	20.0	18.12
TraesCS7B01G144100.1	Wheat	plastid	16.55	17.84
Os02t0727700-01	Rice	cytosol, nucleus, plastid	18.97	17.68
Zm00001d031273_P001	Maize	cytosol, plastid	17.59	17.65
TraesCS6B01G318600.1	Wheat	cytosol, plastid	18.62	17.59
Zm00001d051736_P001	Maize	cytosol	20.0	17.58
Bra037800.1-P	Field mustard	cytosol	18.28	17.55
EES14331	Sorghum	plastid	17.59	17.41
EER90075	Sorghum	nucleus	17.59	16.83
Zm00001d046663_P001	Maize	cytosol	17.24	16.78
Bra000207.1-P	Field mustard	mitochondrion, nucleus	17.59	16.09
Bra038246.1-P	Field mustard	nucleus	17.24	15.38
HORVU6Hr1G072430.1	Barley	cytosol	19.31	15.38
Bra011215.1-P	Field mustard	cytosol	12.07	15.09
Bra035835.1-P	Field mustard	nucleus	16.9	14.98
TraesCS6D01G160300.1	Wheat	nucleus	17.93	14.94
Bra019109.1-P	Field mustard	nucleus	16.55	14.91
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	20.34	14.86
Bra007253.1-P	Field mustard	mitochondrion, nucleus	15.86	14.84
Bra002823.1-P	Field mustard	nucleus	17.93	14.77
TraesCS7D01G387300.1	Wheat	cytosol	16.21	14.42
Bra005020.1-P	Field mustard	nucleus, plastid	16.9	14.37
Zm00001d053704_P001	Maize	cytosol	17.59	14.33
TraesCS7B01G293600.1	Wheat	cytosol	16.21	14.24
TraesCS7A01G391700.1	Wheat	cytosol	16.21	14.2
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	17.93	14.05
GSMUA_Achr3P06300_001	Banana	cytosol	25.17	13.98
Bra030854.1-P	Field mustard	nucleus	14.83	13.78
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	18.28	13.7
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.24	13.4
Bra000143.1-P	Field mustard	nucleus	17.24	13.33
Bra027436.1-P	Field mustard	nucleus	14.14	13.27
TraesCS6B01G198800.1	Wheat	nucleus	18.28	13.22
Bra026444.1-P	Field mustard	nucleus	16.9	13.21
Os02t0191500-01	Rice	nucleus	16.9	13.07
Bra037999.1-P	Field mustard	nucleus	12.76	12.76
Bra037109.1-P	Field mustard	nucleus	14.48	12.57
Bra014266.1-P	Field mustard	nucleus	18.97	12.47
HORVU7Hr1G092570.1	Barley	cytosol	16.21	12.27
Bra006709.1-P	Field mustard	plastid	16.21	11.96
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.1	11.69
Bra020313.1-P	Field mustard	plastid	14.83	11.05
Bra002559.1-P	Field mustard	plastid	14.83	10.83
Bra028935.1-P	Field mustard	nucleus	17.93	9.15

Protein Annotations

EnsemblPlants:Bra005970.1	EnsemblPlants:Bra005970.1-P	EnsemblPlantsGene:Bra005970	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253F73B	UniProt:M4CP32	MapMan:35.1	:

Description

AT5G08139 (E=1e-052) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:1452655..1453527

Molecular Weight (calculated)

32610.9 Da

IEP (calculated)

3.748

GRAVY (calculated)

-0.624

Length

290 amino acids

Sequence
(BLAST)

001: MDPSQQPQVT LPHDNEVTES RGAVMELESE SGSCFIENID HDSDSYLNNL CDFAESDDDS GIEFRDIRLV TVESGSDDDD PEDEREIWGI DLNESDVYDD
101: DDDDDVSVTI HSLEVEDLGG AAVELDWEEV DGGADVSPML SLEDLARDER RDGSGNLEWQ VLMNSHTLEI NFDAENRELY IVGGDQYDLF FEQFAQAGIT
201: NLRFPPASEA FVKNLPTVQL GVENDDCAVC KDEMGIGSRG VVLQLPCNHK YHGECIVPWL ETRNTCPVCR YELPTDDVDY ERRKSHLRTS

Best Arabidopsis Sequence Match ( AT5G08139.1 )
(BLAST)

001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.