Factsheet for Bra000207.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35437	Canola	mitochondrion, nucleus	100.0	100.0
AT2G40830.4	Thale cress	mitochondrion	88.96	85.98
Bra004589.1-P	Field mustard	nucleus	65.62	85.25
Bra007253.1-P	Field mustard	mitochondrion, nucleus	60.88	62.26
Bra014684.1-P	Field mustard	nucleus	35.96	59.38
KRH33121	Soybean	nucleus	55.84	57.28
KRH71659	Soybean	nucleus	55.84	57.28
VIT_08s0040g00590.t01	Wine grape	nucleus	55.2	55.73
GSMUA_AchrUn_...	Banana	nucleus	40.69	50.0
VIT_06s0009g02350.t01	Wine grape	mitochondrion	53.0	50.0
EER92269	Sorghum	nucleus	43.22	48.07
KRH14643	Soybean	nucleus	50.79	47.92
Os03t0351800-01	Rice	nucleus	42.59	47.7
TraesCS3D01G432800.1	Wheat	mitochondrion	43.22	47.4
TraesCS3A01G440000.1	Wheat	mitochondrion	43.22	47.4
TraesCS3B01G474100.1	Wheat	mitochondrion	42.9	47.22
PGSC0003DMT400058464	Potato	nucleus	47.0	46.86
Solyc01g009000.2.1	Tomato	plastid	47.0	46.86
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	38.17	46.72
HORVU3Hr1G096110.1	Barley	mitochondrion	42.27	46.37
Zm00001d047476_P001	Maize	mitochondrion	42.27	45.89
GSMUA_Achr8P09890_001	Banana	nucleus	33.44	45.89
KRH18631	Soybean	nucleus	42.27	43.79
PGSC0003DMT400079301	Potato	nucleus	40.06	42.33
Solyc08g075910.1.1	Tomato	nucleus	39.75	41.86
KRH73496	Soybean	mitochondrion	48.27	41.24
GSMUA_Achr11P...	Banana	mitochondrion	37.85	40.13
KRH18634	Soybean	nucleus	28.08	37.71
Bra001767.1-P	Field mustard	nucleus	23.34	34.58
Bra038246.1-P	Field mustard	nucleus	30.91	30.15
Bra035835.1-P	Field mustard	nucleus	27.76	26.91
Bra002823.1-P	Field mustard	nucleus	27.76	25.0
Bra037999.1-P	Field mustard	nucleus	22.4	24.48
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.92	24.31
Bra005020.1-P	Field mustard	nucleus, plastid	25.55	23.75
Bra030854.1-P	Field mustard	nucleus	23.34	23.72
Bra037109.1-P	Field mustard	nucleus	24.92	23.65
Bra019109.1-P	Field mustard	nucleus	23.97	23.6
Bra030136.1-P	Field mustard	cytosol	17.98	23.55
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.81	22.79
Bra027436.1-P	Field mustard	nucleus	22.08	22.65
Bra000143.1-P	Field mustard	nucleus	26.5	22.4
Bra020313.1-P	Field mustard	plastid	26.81	21.85
Bra002559.1-P	Field mustard	plastid	27.13	21.66
Bra026444.1-P	Field mustard	nucleus	24.92	21.29
Bra037800.1-P	Field mustard	cytosol	20.19	21.19
Bra011215.1-P	Field mustard	cytosol	15.46	21.12
Bra006709.1-P	Field mustard	plastid	25.87	20.87
Bra005970.1-P	Field mustard	cytosol	16.09	17.59
Bra014266.1-P	Field mustard	nucleus	23.34	16.78
Bra028935.1-P	Field mustard	nucleus	27.44	15.32
Bra009323.1-P	Field mustard	cytosol	18.3	15.3
Bra008671.1-P	Field mustard	nucleus	12.3	13.59
Bra021467.1-P	Field mustard	nucleus	16.4	13.33
Bra013006.1-P	Field mustard	nucleus	17.35	13.19
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	15.14	12.09

Protein Annotations

EnsemblPlants:Bra000207.1	EnsemblPlants:Bra000207.1-P	EnsemblPlantsGene:Bra000207	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025402E5	UniProt:M4C7M9
MapMan:35.1	:	:	:	:	:

Description

AT2G40830 (E=3e-095) RHC1A | RHC1A; protein binding / zinc ion binding

Coordinates

chrA03:+:9877660..9878613

Molecular Weight (calculated)

35063.4 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.814

Length

317 amino acids

Sequence
(BLAST)

001: MSSGGNTHWC HRCQRAVRLH GRDPVCSYCG GGFVELLEIP QASPFDMFRS HRDVVERDPT FDLMDALSDF MRNRETRGRS ISSGPENFPG LAPLLIFGGQ
101: VPYRLSGVEA LFNGGSPGIG ITRGNNTGDY FFGPGLEELF EQLSAGTTTR RGPPPAPRSS IDALPTIKIA QRHLRSSDSN CAVCKDEFEL GTEAKQMPCN
201: HIYHSDCIVP WLVQHNSCPV CRQELPSGRG SSSSQNRTTT RNNRSSSSSS GNSRESSNER RNPFSSFWPF RSSGSTSNST QNRGGTRNSD GTDENHNYHQ
301: QQQQQSHMGY GGWPFDY

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.