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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27204 Canola mitochondrion, nucleus 97.1 96.47
CDX72127 Canola mitochondrion 97.42 95.57
AT3G56580.1 Thale cress mitochondrion 78.71 76.25
Bra014684.1-P Field mustard nucleus 44.19 71.35
Bra004589.1-P Field mustard nucleus 50.97 64.75
Bra000207.1-P Field mustard mitochondrion, nucleus 62.26 60.88
KRH71659 Soybean nucleus 50.0 50.16
KRH33121 Soybean nucleus 49.68 49.84
VIT_08s0040g00590.t01 Wine grape nucleus 50.0 49.36
Os03t0351800-01 Rice nucleus 44.19 48.41
EER92269 Sorghum nucleus 43.55 47.37
GSMUA_AchrUn_... Banana nucleus 39.35 47.29
TraesCS3D01G432800.1 Wheat mitochondrion 43.23 46.37
TraesCS3A01G440000.1 Wheat mitochondrion 43.23 46.37
GSMUA_Achr8P09890_001 Banana nucleus 34.52 46.32
Zm00001d047476_P001 Maize mitochondrion 43.55 46.23
TraesCS3B01G474100.1 Wheat mitochondrion 42.9 46.18
HORVU3Hr1G096110.1 Barley mitochondrion 42.58 45.67
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus, plastid 37.42 44.79
PGSC0003DMT400058464 Potato nucleus 44.84 43.71
Solyc01g009000.2.1 Tomato plastid 44.52 43.4
KRH14643 Soybean nucleus 46.77 43.15
VIT_06s0009g02350.t01 Wine grape mitochondrion 45.81 42.26
KRH18631 Soybean nucleus 41.61 42.16
PGSC0003DMT400079301 Potato nucleus 37.42 38.67
Solyc08g075910.1.1 Tomato nucleus 37.1 38.21
KRH73496 Soybean mitochondrion 45.16 37.74
KRH18634 Soybean nucleus 27.1 35.59
GSMUA_Achr11P... Banana mitochondrion 33.23 34.45
Bra001767.1-P Field mustard nucleus 22.9 33.18
Bra038246.1-P Field mustard nucleus 29.03 27.69
Bra028173.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 27.42 26.15
Bra035835.1-P Field mustard nucleus 27.1 25.69
Bra002823.1-P Field mustard nucleus 28.06 24.72
Bra030136.1-P Field mustard cytosol 18.39 23.55
Bra030854.1-P Field mustard nucleus 23.55 23.4
Bra019109.1-P Field mustard nucleus 24.19 23.29
Bra005020.1-P Field mustard nucleus, plastid 24.84 22.58
Bra037109.1-P Field mustard nucleus 24.19 22.46
Bra037999.1-P Field mustard nucleus 20.97 22.41
Bra027436.1-P Field mustard nucleus 22.26 22.33
Bra000143.1-P Field mustard nucleus 26.77 22.13
Bra026444.1-P Field mustard nucleus 26.13 21.83
Bra019382.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 26.13 21.72
Bra002559.1-P Field mustard plastid 27.42 21.41
Bra020313.1-P Field mustard plastid 26.45 21.08
Bra006709.1-P Field mustard plastid 25.48 20.1
Bra037800.1-P Field mustard cytosol 18.39 18.87
Bra011215.1-P Field mustard cytosol 13.87 18.53
Bra005970.1-P Field mustard cytosol 14.84 15.86
Bra014266.1-P Field mustard nucleus 22.26 15.65
Bra028935.1-P Field mustard nucleus 28.06 15.32
Bra009323.1-P Field mustard cytosol 17.74 14.51
Bra008671.1-P Field mustard nucleus 13.23 14.29
Bra021467.1-P Field mustard nucleus 17.42 13.85
Bra013006.1-P Field mustard nucleus 17.1 12.71
Bra023539.1-P Field mustard cytoskeleton, cytosol, nucleus 15.81 12.34
Protein Annotations
EnsemblPlants:Bra007253.1EnsemblPlants:Bra007253.1-PEnsemblPlantsGene:Bra007253Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44290PANTHER:PTHR44290:SF1PFAM:PF13639PFAM:PF14369
PFscan:PS50089SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0002542B92UniProt:M4CSR1
MapMan:35.1:::::
Description
AT3G56580 (E=9e-120) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA09:+:28211162..28212094
Molecular Weight (calculated)
34359.7 Da
IEP (calculated)
7.784
GRAVY (calculated)
-0.793
Length
310 amino acids
Sequence
(BLAST)
001: MSGRNTHWCH RCQRGVYLRG PDSFCTYCGG GFVEEIDVSP FRAHRDLERG PTYDLMEAFS AFMRSRLAER SHDTGRITAS SGGGGGSESF SSIAPFLIFG
101: GQANNTSVEA LLNTSPGGIG ITRGGNVNAG DYFYGPGLEE LIEQLSSGTT HHRGPPPAPK SSIDALPTVK ITQKHLKSSD SHCPVCKEEF ELKSEAKQMP
201: CKHMYHSDCI VPWLVQHNTC PVCRKELPSR GSSSSTERDQ NRGSNRRRNV FSSLWPFRSS SSSSTQNRRD TSNAATVEEG GQYNHHQQLQ HQQQHEQQSH
301: MGYSGWPFDY
Best Arabidopsis Sequence Match ( AT3G56580.2 )
(BLAST)
001: MSSIRNTHWC HRCQRAVWLR ARDAVCSYCG GGFVEEIDIG PSRAHRDVER DPTFDLMEAF SAFMRSRLAE RSYDREISGR LGSAGSESFS NLAPLLIFGG
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
Arabidopsis Description
RZF1E3 ubiquitin-protein ligase RZF1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK4]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.