Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71659 | Soybean | nucleus | 92.88 | 92.88 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 64.72 | 63.69 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 57.28 | 55.84 |
| CDY35437 | Canola | mitochondrion, nucleus | 57.28 | 55.84 |
| Bra004589.1-P | Field mustard | nucleus | 44.01 | 55.74 |
| AT2G40830.4 | Thale cress | mitochondrion | 58.58 | 55.18 |
| CDY22483 | Canola | mitochondrion | 53.72 | 54.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.63 | 54.65 |
| CDY23878 | Canola | mitochondrion, nucleus | 53.4 | 54.1 |
| Os03t0351800-01 | Rice | nucleus | 49.51 | 54.06 |
| CDX79968 | Canola | mitochondrion, nucleus | 51.46 | 53.54 |
| EER92269 | Sorghum | nucleus | 48.87 | 52.98 |
| KRH14643 | Soybean | nucleus | 56.63 | 52.08 |
| Zm00001d047476_P001 | Maize | mitochondrion | 49.19 | 52.05 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 48.54 | 51.9 |
| AT3G56580.1 | Thale cress | mitochondrion | 53.72 | 51.88 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 43.37 | 51.74 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 48.22 | 51.56 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 38.51 | 51.52 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 47.9 | 51.39 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 47.9 | 51.21 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 49.84 | 49.68 |
| CDY27204 | Canola | mitochondrion, nucleus | 49.51 | 49.04 |
| CDX72127 | Canola | mitochondrion | 49.51 | 48.42 |
| Bra014684.1-P | Field mustard | nucleus | 29.13 | 46.88 |
| CDX75998 | Canola | nucleus | 29.13 | 46.88 |
| KRH18631 | Soybean | nucleus | 46.28 | 46.73 |
| PGSC0003DMT400079301 | Potato | nucleus | 45.31 | 46.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 44.66 | 45.85 |
| KRH18634 | Soybean | nucleus | 34.63 | 45.34 |
| KRH73496 | Soybean | mitochondrion | 52.75 | 43.94 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.42 | 42.81 |
| CDX94901 | Canola | cytosol | 42.72 | 42.04 |
| KRH10229 | Soybean | nucleus | 27.18 | 26.75 |
| KRH23103 | Soybean | nucleus | 27.18 | 26.75 |
| KRH36132 | Soybean | nucleus | 23.95 | 25.87 |
| KRG99997 | Soybean | plastid | 25.89 | 25.64 |
| KRH49133 | Soybean | plastid | 24.92 | 25.08 |
| KRG97316 | Soybean | nucleus | 27.83 | 25.0 |
| KRH09399 | Soybean | nucleus | 29.77 | 24.93 |
| KRG90622 | Soybean | nucleus | 23.95 | 24.83 |
| KRH38895 | Soybean | nucleus | 30.1 | 24.73 |
| KRH24759 | Soybean | nucleus | 28.8 | 24.65 |
| KRH29763 | Soybean | nucleus | 28.8 | 24.65 |
| KRH10441 | Soybean | mitochondrion | 25.24 | 24.3 |
| KRH30994 | Soybean | nucleus | 30.42 | 23.92 |
| KRG97885 | Soybean | mitochondrion | 27.51 | 23.81 |
| KRH44018 | Soybean | mitochondrion | 24.27 | 23.66 |
| KRH64713 | Soybean | nucleus | 26.54 | 23.3 |
| KRH73053 | Soybean | nucleus | 27.18 | 21.48 |
| KRH15082 | Soybean | nucleus | 26.54 | 21.47 |
| KRH36150 | Soybean | nucleus | 22.01 | 20.42 |
| KRH70139 | Soybean | nucleus | 21.04 | 20.38 |
| KRG90607 | Soybean | nucleus | 22.01 | 20.18 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 19.74 | 18.94 |
| KRH56750 | Soybean | cytosol | 18.77 | 16.96 |
| KRH18313 | Soybean | nucleus | 18.45 | 15.24 |
| KRH03189 | Soybean | nucleus | 17.48 | 15.21 |
| KRG93748 | Soybean | nucleus, plastid | 18.12 | 14.74 |
| KRH00522 | Soybean | plastid | 25.57 | 14.13 |
| KRH40635 | Soybean | nucleus, plastid | 24.6 | 13.79 |
Protein Annotations
| EntrezGene:100787242 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02006361 | EnsemblPlantsGene:GLYMA_10G101400 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| UniProt:I1J3Y3 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH33121 | ProteinID:KRH33121 | ProteinID:KRH33121.1 |
| PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000233DDEC | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:+:19288828..19291605
Molecular Weight (calculated)
34470.3 Da
IEP (calculated)
8.152
GRAVY (calculated)
-0.649
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSRNTHWC YSCRRPVRLG RRDVVCPSCN LGFVHELNDI VHVNPFDLFG MDNNEERDQR LGLMETFSAF MRHQMADRGR SHDIRVRTDS NPEHSASFAP
101: LLIFGGHIPF RLSRHGGFEA LFNGAPGIGL TQGNTGDYFI GPGLEELFEQ LSANNRQGPL PASRSSIDAM PTIKIVQRHL RSDSHCPVCK DKFELGSKAR
201: QMPCNHLYHS DCIVPWLVQH NSCPVCRQEL PPQGLSSSNG GANGRSRSAR VSSSGRESHG RRNPFSFLWP FRSSHSSSND EATGSSTPTP TIPENSHHHH
301: AGYSGWPFE
101: LLIFGGHIPF RLSRHGGFEA LFNGAPGIGL TQGNTGDYFI GPGLEELFEQ LSANNRQGPL PASRSSIDAM PTIKIVQRHL RSDSHCPVCK DKFELGSKAR
201: QMPCNHLYHS DCIVPWLVQH NSCPVCRQEL PPQGLSSSNG GANGRSRSAR VSSSGRESHG RRNPFSFLWP FRSSHSSSND EATGSSTPTP TIPENSHHHH
301: AGYSGWPFE
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.