Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 3
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 70.66 | 70.93 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 45.17 | 50.65 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 55.6 | 45.86 |
| Bra014684.1-P | Field mustard | nucleus | 32.43 | 43.75 |
| CDX75998 | Canola | nucleus | 32.43 | 43.75 |
| KRH33121 | Soybean | nucleus | 51.74 | 43.37 |
| KRH71659 | Soybean | nucleus | 51.35 | 43.04 |
| PGSC0003DMT400058464 | Potato | nucleus | 52.12 | 42.45 |
| Solyc01g009000.2.1 | Tomato | plastid | 51.35 | 41.82 |
| KRH14643 | Soybean | nucleus | 53.67 | 41.37 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 52.51 | 40.48 |
| CDY22483 | Canola | mitochondrion | 45.56 | 38.94 |
| CDX79968 | Canola | mitochondrion, nucleus | 44.4 | 38.72 |
| Bra004589.1-P | Field mustard | nucleus | 36.29 | 38.52 |
| CDY23878 | Canola | mitochondrion, nucleus | 45.17 | 38.36 |
| KRH18631 | Soybean | nucleus | 45.17 | 38.24 |
| CDY35437 | Canola | mitochondrion, nucleus | 46.72 | 38.17 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 46.72 | 38.17 |
| KRH18634 | Soybean | nucleus | 34.36 | 37.71 |
| GSMUA_Achr11P... | Banana | mitochondrion | 43.24 | 37.46 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 44.79 | 37.42 |
| CDY27204 | Canola | mitochondrion, nucleus | 44.79 | 37.18 |
| CDX72127 | Canola | mitochondrion | 45.17 | 37.03 |
| AT2G40830.4 | Thale cress | mitochondrion | 46.33 | 36.59 |
| AT3G56580.1 | Thale cress | mitochondrion | 44.79 | 36.25 |
| PGSC0003DMT400079301 | Potato | nucleus | 40.15 | 34.67 |
| KRH73496 | Soybean | mitochondrion | 49.42 | 34.5 |
| Solyc08g075910.1.1 | Tomato | nucleus | 39.77 | 34.22 |
| CDX94901 | Canola | cytosol | 37.84 | 31.21 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 29.34 | 30.89 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 21.62 | 29.32 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 20.46 | 28.49 |
| GSMUA_Achr11P... | Banana | nucleus | 28.57 | 27.41 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 32.82 | 26.9 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 32.82 | 25.84 |
| GSMUA_Achr10P... | Banana | nucleus | 27.41 | 25.18 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 27.8 | 24.57 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 28.19 | 24.5 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 27.8 | 24.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 30.89 | 23.74 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 31.66 | 23.36 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 30.12 | 22.67 |
| GSMUA_Achr10P... | Banana | nucleus | 25.87 | 22.11 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 30.12 | 21.55 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 27.03 | 19.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 30.5 | 19.65 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 22.01 | 13.77 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 18.53 | 12.12 |
| GSMUA_Achr11P... | Banana | cytosol | 24.71 | 8.83 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 15.44 | 7.66 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP14800_001 | EnsemblPlants:GSMUA_AchrUn_randomT14800_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG14800_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029661C2 | UniProt:M0U989 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14800_001]
Coordinates
chrchrUn_random:+:69752426..69754464
Molecular Weight (calculated)
29424.5 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.626
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRANTHWCY ICRQTVLPLG RDMICPNCDR GFVQDLNELD GSMNTFDYFG VDYRGNRNDQ FGIIDALSAL IRQQMEGRSH EFDLHGRPSN RGIEIIFNGG
101: AGVGMRHANI GNYARGSGFN DLIEQLIRND GHGPPPASQS AIDAMPTVKI NQRHLRGDSH CPVCKEKFEL GTEARELPCK HLYHSDCIIP WLVRHNSCPV
201: CRHRLPSQES TRRNLFSFLW PYYTSNTANS SSNESSRSSS TAVHEDINQM HYTGWPFDY
101: AGVGMRHANI GNYARGSGFN DLIEQLIRND GHGPPPASQS AIDAMPTVKI NQRHLRGDSH CPVCKEKFEL GTEARELPCK HLYHSDCIIP WLVRHNSCPV
201: CRHRLPSQES TRRNLFSFLW PYYTSNTANS SSNESSRSSS TAVHEDINQM HYTGWPFDY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.