Factsheet for GSMUA_Achr6P23590_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	64.24	62.96
GSMUA_Achr7P15040_001	Banana	mitochondrion	57.56	62.66
GSMUA_Achr10P...	Banana	mitochondrion	57.56	58.75
GSMUA_Achr5P07070_001	Banana	nucleus	52.91	55.32
GSMUA_Achr2P19140_001	Banana	mitochondrion	57.27	54.42
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	60.17	53.63
GSMUA_Achr10P...	Banana	mitochondrion	61.63	52.74
Os05t0110000-01	Rice	mitochondrion	50.58	52.25
KRH10229	Soybean	nucleus	47.38	51.91
KRH23103	Soybean	nucleus	46.8	51.27
TraesCS3D01G532300.1	Wheat	cytosol	57.27	51.04
KRG97885	Soybean	mitochondrion	52.03	50.14
Zm00001d035677_P001	Maize	plastid	50.0	49.43
KRH24759	Soybean	nucleus	51.74	49.31
TraesCS3B01G595200.1	Wheat	cytosol	56.98	49.12
KRH29763	Soybean	nucleus	51.45	49.03
Solyc06g005650.2.1	Tomato	extracellular	28.2	48.5
PGSC0003DMT400016233	Potato	nucleus	55.52	48.48
HORVU1Hr1G004330.14	Barley	cytosol	56.4	48.38
TraesCS1A01G029800.1	Wheat	cytosol	56.1	48.37
Solyc04g011610.1.1	Tomato	nucleus	55.52	48.35
TraesCS1B01G036900.1	Wheat	cytosol	55.81	48.12
KRH30994	Soybean	nucleus	54.94	48.09
TraesCS1D01G030300.1	Wheat	nucleus	55.52	47.51
HORVU7Hr1G055010.1	Barley	cytosol	30.52	47.51
PGSC0003DMT400005512	Potato	mitochondrion	53.2	47.41
CDY20473	Canola	nucleus, plastid	44.19	45.51
CDX80258	Canola	plastid	46.8	45.35
CDY53450	Canola	cytosol	42.44	45.34
Zm00001d011076_P001	Maize	plastid	50.87	45.22
GSMUA_Achr10P...	Banana	nucleus	36.63	44.68
EES17560	Sorghum	plastid	53.49	44.55
Bra005020.1-P	Field mustard	nucleus, plastid	43.9	44.28
Os01t0972000-01	Rice	nucleus	42.73	44.01
HORVU3Hr1G041030.1	Barley	mitochondrion	49.42	43.93
CDX74839	Canola	cytosol, plastid	41.28	43.83
Bra020313.1-P	Field mustard	plastid	48.26	42.67
CDY61251	Canola	cytosol	44.77	42.66
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.35	41.82
Bra002559.1-P	Field mustard	plastid	48.26	41.81
KRH15082	Soybean	nucleus	46.22	41.62
CDY48679	Canola	cytosol, plastid	40.41	41.62
Bra006709.1-P	Field mustard	plastid	47.38	41.48
CDX88709	Canola	cytosol, plastid	47.09	41.12
HORVU3Hr1G115000.7	Barley	mitochondrion	46.8	41.07
CDX99105	Canola	cytosol, plastid	38.66	41.05
CDY33046	Canola	plastid	40.7	40.94
KRH73053	Soybean	nucleus	45.93	40.41
CDY07641	Canola	nucleus	43.9	40.37
Bra000143.1-P	Field mustard	nucleus	43.9	40.27
CDY24951	Canola	nucleus	43.9	40.27
AT3G46620.1	Thale cress	cytosol, plastid	46.22	40.25
AT2G39720.2	Thale cress	nucleus	46.51	39.9
GSMUA_Achr8P09890_001	Banana	nucleus	22.67	33.77
GSMUA_Achr9P05060_001	Banana	nucleus	17.44	32.26
GSMUA_Achr7P13060_001	Banana	mitochondrion	22.67	31.71
AT5G59550.2	Thale cress	nucleus, plastid	46.51	31.25
GSMUA_AchrUn_...	Banana	nucleus	22.97	30.62
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	22.67	30.12
GSMUA_Achr5P19380_001	Banana	plastid	16.57	29.84
GSMUA_Achr11P...	Banana	nucleus	22.97	29.26
GSMUA_Achr2P03780_001	Banana	cytosol	26.16	25.64
GSMUA_Achr11P...	Banana	mitochondrion	22.09	25.42
GSMUA_Achr6P08590_001	Banana	nucleus	21.51	25.26
GSMUA_Achr7P18340_001	Banana	nucleus	21.51	24.67
GSMUA_Achr5P07680_001	Banana	nucleus	20.93	24.16
GSMUA_Achr10P...	Banana	nucleus	21.22	24.09
GSMUA_Achr4P02460_001	Banana	nucleus	17.73	14.73
GSMUA_Achr8P24510_001	Banana	cytosol	15.99	13.89
GSMUA_Achr3P06300_001	Banana	cytosol	15.41	10.15
GSMUA_Achr11P...	Banana	cytosol	20.06	9.52

Protein Annotations

EnsemblPlants:GSMUA_Achr6P23590_001	EnsemblPlants:GSMUA_Achr6T23590_001	EnsemblPlantsGene:GSMUA_Achr6G23590_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294B15F
UniProt:M0T9K7	MapMan:35.1	:	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G23590_001]

Coordinates

chr6:-:23816938..23818053

Molecular Weight (calculated)

38065.2 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.417

Length

344 amino acids

Sequence
(BLAST)

001: METAPSFWCY RCGRFVRLWP RAAVVCPDCG GGFLEEVDGP SRAPLYAALR VRRNRRAPTG NRSPFNPVIV LRSPPDVRGD ADGATSNNFE LYYDDGAGSG
101: LRPLPESVSD FLMDSGFERL LDQLAHIEIN GTGVSRVLAH LPASKAAIES MPTIEISDGH IIRESHCAVC KEPFVFGTEA CEMPCKHIYH QDCILPWLSL
201: RNSCPVCRHE MPMDVPEEDD NGGEMVGLTI WRLPGGGFAV GRYTGGRRAE GELPVVYTEM DGELNSRMAP RRMSSSSRGS RSREDGGISV FSFFRHLRSP
301: SSSLRLSSEP LPTYTPLLTR RRSSRRRNTN WGLEAGNANT IARS

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.