Factsheet for HORVU3Hr1G041030.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G532300.1	Wheat	cytosol	81.4	81.61
TraesCS3B01G595200.1	Wheat	cytosol	81.65	79.2
HORVU3Hr1G115000.7	Barley	mitochondrion	72.87	71.94
HORVU7Hr1G055010.1	Barley	cytosol	39.28	68.78
HORVU1Hr1G004330.14	Barley	cytosol	57.62	55.61
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	50.13	55.27
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	49.61	49.74
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	43.93	49.42
KRH10229	Soybean	nucleus	39.02	48.09
KRH23103	Soybean	nucleus	38.5	47.45
KRG97885	Soybean	mitochondrion	43.67	47.34
Solyc04g011610.1.1	Tomato	nucleus	48.06	47.09
PGSC0003DMT400016233	Potato	nucleus	47.55	46.7
KRH29763	Soybean	nucleus	43.15	46.26
KRH24759	Soybean	nucleus	42.64	45.71
KRH30994	Soybean	nucleus	45.22	44.53
PGSC0003DMT400005512	Potato	mitochondrion	43.67	43.78
HORVU4Hr1G060130.1	Barley	cytosol	39.53	43.47
CDY20473	Canola	nucleus, plastid	37.47	43.41
Bra005020.1-P	Field mustard	nucleus, plastid	37.21	42.23
CDX74839	Canola	cytosol, plastid	35.14	41.98
CDY61251	Canola	cytosol	37.98	40.72
Solyc06g005650.2.1	Tomato	extracellular	20.67	40.0
Bra000143.1-P	Field mustard	nucleus	38.76	40.0
CDX80258	Canola	plastid	36.69	40.0
CDY24951	Canola	nucleus	38.5	39.73
CDY07641	Canola	nucleus	38.24	39.57
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.73	39.14
CDY53450	Canola	cytosol	32.56	39.13
Bra020313.1-P	Field mustard	plastid	38.76	38.56
Bra006709.1-P	Field mustard	plastid	38.76	38.17
CDX88709	Canola	cytosol, plastid	38.5	37.82
Bra002559.1-P	Field mustard	plastid	38.76	37.78
KRH15082	Soybean	nucleus	37.21	37.7
CDX99105	Canola	cytosol, plastid	31.27	37.35
AT3G46620.1	Thale cress	cytosol, plastid	37.98	37.22
AT2G39720.2	Thale cress	nucleus	38.24	36.91
CDY48679	Canola	cytosol, plastid	31.78	36.83
KRH73053	Soybean	nucleus	36.95	36.57
CDY33046	Canola	plastid	32.04	36.26
AT5G59550.2	Thale cress	nucleus, plastid	38.24	28.91
HORVU3Hr1G096110.1	Barley	mitochondrion	19.9	26.64
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	21.19	22.34
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	18.86	21.92
HORVU0Hr1G019650.1	Barley	mitochondrion	17.57	21.45
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	18.35	19.89
HORVU4Hr1G051610.2	Barley	cytosol	16.54	18.55
HORVU5Hr1G111530.1	Barley	nucleus	18.86	18.34
HORVU3Hr1G039220.1	Barley	cytosol	17.57	18.04
HORVU6Hr1G072430.1	Barley	cytosol	16.8	17.86
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	16.54	17.3
HORVU1Hr1G068950.2	Barley	golgi	16.8	16.84
HORVU7Hr1G092570.1	Barley	cytosol	14.99	15.14

Protein Annotations

EnsemblPlants:HORVU3Hr1G041030.1	EnsemblPlantsGene:HORVU3Hr1G041030	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547	PFAM:PF13639
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000B468943	UniProt:A0A287KV62	MapMan:35.1

Description

No Description!

Coordinates

chrchr3H:+:254832970..254834134

Molecular Weight (calculated)

41038.7 Da

IEP (calculated)

8.581

GRAVY (calculated)

-0.511

Length

387 amino acids

Sequence
(BLAST)

001: WIGGRPRLPA RRWRRGRRPT GATAASGSCA RRGTPGWPAP AAMAASWSRW TRRRRAGRSX AADTPAEVRP CRGTHGGASG DRSGSPYNPV IVLRRSAAPP
101: GDDATGATSS FELFYDDDAG SGLRPLPESM SDFLMGSGVE RLLEQLAQIE AGGFGAVHPC DNPPASNAAV ESMPTVVLAA CHVGADSHRA VCKEAFELGD
201: EAGEMPCSHM YHQDCIMPWL ALRNSCPVCR HELPTDVPRS APAGDLGAAD DQGSNTGAEA GSEEETTVGL TIWRLPGGGF AVGRFASGRR AGERELPVVY
301: TEVDGGFNNG GAPRRISWSS RGSRSSQRGI VRRMFDNMFA CFGHAHSTNA ARASSSRSEW SSVFTRGLRS SSTSWRSQDS HADAIAR

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.