Factsheet for Solyc04g011610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016233	Potato	nucleus	98.23	98.48
GSMUA_Achr7P15040_001	Banana	mitochondrion	48.61	60.76
KRG97885	Soybean	mitochondrion	53.92	59.66
KRH30994	Soybean	nucleus	58.23	58.52
Solyc06g005650.2.1	Tomato	extracellular	28.86	57.0
GSMUA_Achr10P...	Banana	mitochondrion	47.85	56.08
Os05t0110000-01	Rice	mitochondrion	46.84	55.56
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.35	55.52
EER95109	Sorghum	plastid	38.48	55.27
Os03t0271600-01	Rice	plastid	38.99	55.2
TraesCS4D01G209500.1	Wheat	plastid	38.99	55.0
TraesCS4B01G209100.1	Wheat	plastid	38.99	55.0
TraesCS4A01G095800.1	Wheat	cytosol	38.99	55.0
Zm00001d028590_P001	Maize	plastid	38.48	54.68
Zm00001d047824_P001	Maize	plastid	38.48	54.68
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.35	54.42
GSMUA_Achr5P07070_001	Banana	nucleus	44.56	53.5
TraesCS3D01G532300.1	Wheat	cytosol	51.39	52.59
GSMUA_Achr2P19140_001	Banana	mitochondrion	48.1	52.49
Zm00001d035677_P001	Maize	plastid	45.32	51.44
TraesCS3B01G595200.1	Wheat	cytosol	51.65	51.13
GSMUA_Achr10P...	Banana	mitochondrion	50.63	49.75
TraesCS1A01G029800.1	Wheat	cytosol	49.87	49.37
TraesCS1B01G036900.1	Wheat	cytosol	49.37	48.87
EES17560	Sorghum	plastid	50.89	48.67
TraesCS1D01G030300.1	Wheat	nucleus	49.37	48.51
HORVU1Hr1G004330.14	Barley	cytosol	48.86	48.13
HORVU3Hr1G041030.1	Barley	mitochondrion	47.09	48.06
Zm00001d011076_P001	Maize	plastid	45.82	46.77
HORVU7Hr1G055010.1	Barley	cytosol	25.57	45.7
Os01t0972000-01	Rice	nucleus	37.97	44.91
HORVU4Hr1G060130.1	Barley	cytosol	39.24	44.03
HORVU3Hr1G115000.7	Barley	mitochondrion	43.29	43.62
GSMUA_Achr10P...	Banana	nucleus	29.62	41.49
Solyc01g009000.2.1	Tomato	plastid	24.56	30.5
Solyc04g009170.1.1	Tomato	nucleus	22.03	28.16
Solyc08g075910.1.1	Tomato	nucleus	21.27	27.91
Solyc11g012950.1.1	Tomato	cytosol	20.51	24.32
Solyc01g104260.2.1	Tomato	mitochondrion	17.97	23.67
Solyc03g098590.2.1	Tomato	cytosol	22.03	23.58
Solyc01g050040.2.1	Tomato	nucleus	16.71	22.6
Solyc09g074460.1.1	Tomato	nucleus	21.27	22.28
Solyc02g089410.2.1	Tomato	nucleus	12.41	14.98
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	14.18	14.11
Solyc03g114680.2.1	Tomato	nucleus	15.95	12.65

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:DUF1117	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083
UniProt:K4BPL4	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g011610.1	EnsemblPlants:Solyc04g011610.1.1	UniParc:UPI0002765FF0
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:4048148..4049335

Molecular Weight (calculated)

42670.7 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.537

Length

395 amino acids

Sequence
(BLAST)

001: MSSTYWCYRC NRFYRVWSEE SITCPDCNTG FVEEIEAPTR STLSGSRRRR FPPAVMQTAA RSTDQSPASG YGSGSSPGVR RNRRNTGDRS PFNPVIVLRG
101: STNGGGAGGE GGGGGGGGGF ELYYDDGTGS GLRPLPTSMS EFLLGSGFDR LLDQLAQIEA NGIGRMENPP ASKAAIESLP TIEIIHSHIV AESCCAVCKE
201: AFELGTEARE MPCKHLYHSD CILPWLSLRN SCPVCRHELP SESRDVVDPN RAPSEQSEQS VATNNEVEEA VGLTIWRLPG GGFAVGRLGR RGGERALPVV
301: FTEMDGGFNN NNNNGVPRRI SWGSRGSESR QSGGFRRFFG NLFSCFGGIG SSGSSSSSDS RINQSRSSSM SSVFLATARR RRGWGFEANN GVRRW

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.