Factsheet for Os03t0271600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G209500.1	Wheat	plastid	94.98	94.64
TraesCS4B01G209100.1	Wheat	plastid	94.98	94.64
TraesCS4A01G095800.1	Wheat	cytosol	94.62	94.29
Zm00001d047824_P001	Maize	plastid	92.47	92.81
Zm00001d028590_P001	Maize	plastid	92.47	92.81
EER95109	Sorghum	plastid	91.4	92.73
HORVU4Hr1G060130.1	Barley	cytosol	94.62	75.0
GSMUA_Achr7P15040_001	Banana	mitochondrion	56.63	50.0
KRH23103	Soybean	nucleus	54.84	48.73
KRH10229	Soybean	nucleus	54.12	48.09
GSMUA_Achr10P...	Banana	mitochondrion	55.91	46.29
CDY20473	Canola	nucleus, plastid	54.48	45.51
Bra005020.1-P	Field mustard	nucleus, plastid	54.48	44.57
Os05t0110000-01	Rice	mitochondrion	52.69	44.14
CDX74839	Canola	cytosol, plastid	51.25	44.14
GSMUA_Achr5P07070_001	Banana	nucleus	51.61	43.77
KRH29763	Soybean	nucleus	56.27	43.49
KRG97885	Soybean	mitochondrion	54.84	42.86
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	59.14	42.75
KRH24759	Soybean	nucleus	55.2	42.66
Bra000143.1-P	Field mustard	nucleus	56.27	41.87
KRH30994	Soybean	nucleus	58.78	41.73
CDY07641	Canola	nucleus	55.91	41.71
CDY53450	Canola	cytosol	48.03	41.61
CDY24951	Canola	nucleus	55.56	41.33
PGSC0003DMT400005512	Potato	mitochondrion	56.99	41.19
Solyc06g005650.2.1	Tomato	extracellular	29.39	41.0
GSMUA_Achr2P19140_001	Banana	mitochondrion	53.05	40.88
CDY61251	Canola	cytosol	52.33	40.44
GSMUA_Achr10P...	Banana	mitochondrion	58.06	40.3
CDX80258	Canola	plastid	51.25	40.28
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.33	39.14
PGSC0003DMT400016233	Potato	nucleus	55.2	39.09
Solyc04g011610.1.1	Tomato	nucleus	55.2	38.99
Bra020313.1-P	Field mustard	plastid	53.76	38.56
Os01t0972000-01	Rice	nucleus	45.88	38.32
Bra002559.1-P	Field mustard	plastid	54.12	38.04
CDY48679	Canola	cytosol, plastid	45.52	38.02
Bra006709.1-P	Field mustard	plastid	53.41	37.91
AT2G39720.2	Thale cress	nucleus	54.48	37.91
CDX88709	Canola	cytosol, plastid	53.41	37.82
CDX99105	Canola	cytosol, plastid	43.73	37.65
AT3G46620.1	Thale cress	cytosol, plastid	52.69	37.22
CDY33046	Canola	plastid	45.52	37.13
KRH15082	Soybean	nucleus	48.39	35.34
KRH73053	Soybean	nucleus	48.03	34.27
Os06t0633500-01	Rice	cytosol, nucleus	14.34	32.26
AT5G59550.2	Thale cress	nucleus, plastid	54.84	29.88
Os03t0351800-01	Rice	nucleus	26.16	25.8
Os03t0324900-01	Rice	cytosol	26.88	23.44
Os02t0767600-00	Rice	mitochondrion	27.24	23.17
Os05t0495000-00	Rice	mitochondrion	23.66	23.08
Os08t0487500-01	Rice	plastid	21.51	22.14
Os06t0101300-01	Rice	nucleus	25.45	21.01
Os01t0802000-01	Rice	nucleus	24.73	20.97
Os02t0727700-01	Rice	cytosol, nucleus, plastid	23.3	20.9
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	27.6	20.81
Os05t0488800-01	Rice	nucleus	23.3	20.12
Os03t0812200-01	Rice	nucleus	25.45	19.24
Os01t0276600-01	Rice	nucleus	22.58	19.15
Os02t0191500-01	Rice	nucleus	20.79	15.47
Os12t0118700-01	Rice	nucleus	22.58	12.63
Os11t0119200-01	Rice	nucleus	21.51	12.22

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4332393	ProteinID:AAP06871.1	ProteinID:ABF95217.1	EMBL:AK067221
ProteinID:BAF11607.1	ProteinID:BAS83482.1	InterPro:DUF1117	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os03g0271600
EnsemblPlants:Os03t0271600-01	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF1	UniProt:Q84Q81	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000018DC0D	RefSeq:XP_015628012.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0271600-01)

Coordinates

chr3:+:9084480..9085918

Molecular Weight (calculated)

29738.1 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.305

Length

279 amino acids

Sequence
(BLAST)

001: MASSPVSYWC YHCSRFVRVS PSTVVCPECD GGFLEQFPQP PPRGGGGSGR RGAMNPVIVL RGGSLSGFEL YYDDGSGDGL RPLPGDVSHL LMGSGFHRLL
101: DQFSRLEAAA PRPPASKAAV ESMPSVTVAG SGAHCAVCQE AFEPGASARE MPCKHVYHQD CILPWLSLRN SCPVCRRELP AAAAPESEAD AGLTIWRLPR
201: GGFAVGRFAG GPREQLPVVY TELDGGFSNG VGPRRVTWPE GDGHVDGGEG RIRRVFRNLF GCFGRSSRPE SSSSQSRSG

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.