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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019382.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 95.99 83.38
CDY61251 Canola cytosol 91.98 82.55
AT3G46620.1 Thale cress cytosol, plastid 81.48 66.84
CDY33046 Canola plastid 68.21 64.62
CDY48679 Canola cytosol, plastid 66.05 64.07
CDX80258 Canola plastid 66.05 60.28
CDY53450 Canola cytosol 54.63 54.97
CDX88709 Canola cytosol, plastid 64.81 53.3
Os03t0271600-01 Rice plastid 37.65 43.73
EER95109 Sorghum plastid 37.04 43.64
GSMUA_AchrUn_... Banana mitochondrion, plastid 47.22 43.59
Zm00001d028590_P001 Maize plastid 37.04 43.17
Zm00001d047824_P001 Maize plastid 37.04 43.17
TraesCS4A01G095800.1 Wheat cytosol 36.73 42.5
TraesCS4B01G209100.1 Wheat plastid 36.73 42.5
TraesCS4D01G209500.1 Wheat plastid 36.73 42.5
GSMUA_Achr7P15040_001 Banana mitochondrion 41.05 42.09
KRH10229 Soybean nucleus 40.74 42.04
KRH23103 Soybean nucleus 40.74 42.04
VIT_06s0004g05090.t01 Wine grape mitochondrion, nucleus 46.91 39.38
GSMUA_Achr10P... Banana mitochondrion 40.43 38.87
KRH24759 Soybean nucleus 43.21 38.78
GSMUA_Achr6P23590_001 Banana mitochondrion, nucleus 41.05 38.66
KRH29763 Soybean nucleus 42.9 38.5
CDY20473 Canola nucleus, plastid 38.58 37.43
CDX74839 Canola cytosol, plastid 37.35 37.35
Zm00001d035677_P001 Maize plastid 39.81 37.07
PGSC0003DMT400005512 Potato mitochondrion 44.14 37.05
GSMUA_Achr2P19140_001 Banana mitochondrion 41.05 36.74
GSMUA_Achr5P07070_001 Banana nucleus 37.04 36.47
TraesCS3D01G532300.1 Wheat cytosol 42.59 35.75
Os05t0110000-01 Rice mitochondrion 36.42 35.44
TraesCS3B01G595200.1 Wheat cytosol 43.52 35.34
TraesCS1A01G029800.1 Wheat cytosol 42.59 34.59
GSMUA_Achr10P... Banana mitochondrion 42.9 34.58
TraesCS1B01G036900.1 Wheat cytosol 42.28 34.34
CDY07641 Canola nucleus 39.51 34.22
HORVU4Hr1G060130.1 Barley cytosol 37.04 34.09
TraesCS1D01G030300.1 Wheat nucleus 42.28 34.08
HORVU1Hr1G004330.14 Barley cytosol 41.98 33.92
CDY24951 Canola nucleus 39.2 33.87
Os01t0972000-01 Rice nucleus 33.95 32.93
EES17560 Sorghum plastid 41.98 32.93
Zm00001d011076_P001 Maize plastid 38.89 32.56
Solyc06g005650.2.1 Tomato extracellular 20.06 32.5
HORVU3Hr1G041030.1 Barley mitochondrion 37.35 31.27
GSMUA_Achr10P... Banana nucleus 26.54 30.5
HORVU7Hr1G055010.1 Barley cytosol 20.37 29.86
HORVU3Hr1G115000.7 Barley mitochondrion 36.11 29.85
CDX94665 Canola nucleus 19.75 27.23
CDY68603 Canola cytosol 20.06 26.86
CDX82271 Canola cytosol 17.28 26.29
CDY36069 Canola cytosol 17.59 26.27
CDY32333 Canola cytosol 18.83 25.96
CDY72364 Canola cytosol 17.59 25.68
CDX75998 Canola nucleus 14.81 25.0
CDY22483 Canola mitochondrion 22.53 24.09
CDX79968 Canola mitochondrion, nucleus 21.3 23.23
CDY23878 Canola mitochondrion, nucleus 21.6 22.95
CDY26096 Canola nucleus 20.68 22.79
CDX81263 Canola cytosol, peroxisome, plastid 20.37 22.76
CDY18690 Canola cytosol, peroxisome, plastid 20.68 22.41
CDY35437 Canola mitochondrion, nucleus 21.91 22.4
CDY33437 Canola cytosol 22.22 22.22
CDY24592 Canola nucleus 21.91 22.12
CDY46577 Canola nucleus 19.75 21.99
CDY10554 Canola cytosol 20.68 21.97
CDY01221 Canola cytosol 14.51 21.56
CDY27204 Canola mitochondrion, nucleus 20.68 21.47
CDY25360 Canola cytosol, nucleus, plastid 21.3 21.36
CDX72127 Canola mitochondrion 20.68 21.2
CDY22790 Canola nucleus 17.59 21.11
CDY56022 Canola nucleus 20.37 21.09
CDY50031 Canola cytosol 18.52 20.69
CDY01669 Canola plastid 20.37 20.43
CDX74533 Canola cytosol 17.9 19.86
CDY43991 Canola nucleus 18.83 19.74
CDY08249 Canola cytosol 20.37 19.7
CDX92768 Canola nucleus 17.9 18.77
CDY32791 Canola nucleus 20.37 18.75
CDY56080 Canola cytosol 16.36 18.66
CDY56081 Canola nucleus 13.58 18.41
CDY42740 Canola nucleus 17.9 18.01
CDX92770 Canola nucleus 17.9 17.9
CDX89343 Canola cytosol, mitochondrion 19.44 17.9
CDX94901 Canola cytosol 16.98 17.52
CDY42507 Canola cytosol 18.21 17.4
CDX94342 Canola mitochondrion, nucleus 20.06 16.8
CDX78323 Canola cytosol 14.2 15.97
CDY28208 Canola cytosol 11.42 15.95
CDY02194 Canola peroxisome 19.44 15.83
CDY51628 Canola peroxisome 19.44 15.52
CDY69134 Canola cytosol 13.89 15.46
CDY58938 Canola nucleus 19.75 14.51
CDY03622 Canola nucleus 19.75 14.35
CDX69496 Canola cytosol 12.35 13.89
CDY21513 Canola cytosol 15.12 13.76
CDX85531 Canola cytosol 14.51 13.7
CDX69973 Canola cytosol 15.12 13.61
CDX90972 Canola cytosol 13.89 13.43
CDY34721 Canola cytosol 16.05 13.33
CDY34722 Canola cytosol 16.05 13.33
CDY26465 Canola cytosol 13.89 13.27
CDY11934 Canola nucleus 22.53 11.2
CDY23599 Canola golgi, mitochondrion 18.83 10.02
Protein Annotations
EnsemblPlants:CDX99105EnsemblPlantsGene:GSBRNA2T00107254001Gene3D:3.30.40.10GO:A0A078EAI1InterPro:DUF1117InterPro:IPR001841
InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44274PANTHER:PTHR44274:SF3PFAM:PF06547
PFAM:PF13639PFAM:PF14369PFscan:PS50089ProteinID:CDX99105ProteinID:CDX99105.1SEG:seg
SMART:SM00184SUPFAM:SSF57850UniParc:UPI0004EE87FAMapMan:35.1::
Description
BnaA06g17960D
Coordinates
chrLK031908:+:368728..370366
Molecular Weight (calculated)
35162.2 Da
IEP (calculated)
5.514
GRAVY (calculated)
-0.431
Length
324 amino acids
Sequence
(BLAST)
001: MPSRSATTTA APTTTETTTS YWCYSCTRFV SVSTGGGYVL CPYCNGGFIE EVEDSSAAEA PTTTTPVPQV ADIENEEGDR RPYEFYYDDG SGSGLRALPE
101: SIEASGNGIG RSGNPPASKS AIESLPRVEM GELHIKAEAN CAVCTEVFEA GAEGREMPCK HIFHGDCIVP WLSIRNSCPV CRFELPSDPV RRSNEEEEPA
201: VGMTIWRLPG GGFAVGRFNA AMREGERILP VVLTEVDGGG LGSNEGPRRI SWVRDHGTPE ISRNAARAGR LRRAARGMIS FMRRMRPNLR ASSSSSSSSN
301: VIDLDTNGES RVMNRSTSLI RRFF
Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)
001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF
Arabidopsis Description
RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.