Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72364 | Canola | cytosol | 65.74 | 95.95 |
| Bra038246.1-P | Field mustard | nucleus | 95.06 | 94.77 |
| CDY36069 | Canola | cytosol | 56.17 | 83.87 |
| CDX82271 | Canola | cytosol | 54.32 | 82.63 |
| CDY24592 | Canola | nucleus | 81.17 | 81.93 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 78.7 | 78.95 |
| AT3G19950.2 | Thale cress | cytosol | 78.09 | 65.54 |
| CDY22790 | Canola | nucleus | 41.67 | 50.0 |
| KRH36132 | Soybean | nucleus | 40.43 | 45.8 |
| PGSC0003DMT400082489 | Potato | nucleus | 45.37 | 45.65 |
| Solyc04g009170.1.1 | Tomato | nucleus | 43.21 | 45.31 |
| KRG90622 | Soybean | nucleus | 41.67 | 45.3 |
| Zm00001d045625_P001 | Maize | cytosol | 42.9 | 44.84 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 49.07 | 43.09 |
| EER89027 | Sorghum | nucleus | 42.59 | 42.99 |
| CDY42507 | Canola | cytosol | 44.75 | 42.77 |
| Os06t0101300-01 | Rice | nucleus | 42.28 | 40.53 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 39.51 | 38.79 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 39.81 | 38.51 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 38.89 | 35.29 |
| CDY22483 | Canola | mitochondrion | 28.4 | 30.36 |
| CDY35437 | Canola | mitochondrion, nucleus | 29.32 | 29.97 |
| CDY26096 | Canola | nucleus | 27.16 | 29.93 |
| CDY23878 | Canola | mitochondrion, nucleus | 28.09 | 29.84 |
| CDY46577 | Canola | nucleus | 26.54 | 29.55 |
| CDX75998 | Canola | nucleus | 16.98 | 28.65 |
| CDY10554 | Canola | cytosol | 26.54 | 28.2 |
| CDX72127 | Canola | mitochondrion | 27.16 | 27.85 |
| CDX79968 | Canola | mitochondrion, nucleus | 25.31 | 27.61 |
| CDY27204 | Canola | mitochondrion, nucleus | 26.54 | 27.56 |
| CDY08249 | Canola | cytosol | 28.09 | 27.16 |
| CDY50031 | Canola | cytosol | 23.77 | 26.55 |
| CDY43991 | Canola | nucleus | 25.31 | 26.54 |
| CDX92768 | Canola | nucleus | 25.31 | 26.54 |
| CDY56022 | Canola | nucleus | 25.62 | 26.52 |
| CDY32333 | Canola | cytosol | 19.14 | 26.38 |
| CDY56080 | Canola | cytosol | 22.84 | 26.06 |
| CDX74533 | Canola | cytosol | 23.46 | 26.03 |
| CDY32791 | Canola | nucleus | 27.78 | 25.57 |
| CDY20473 | Canola | nucleus, plastid | 26.23 | 25.45 |
| CDX74839 | Canola | cytosol, plastid | 25.31 | 25.31 |
| CDX92770 | Canola | nucleus | 25.31 | 25.31 |
| CDX94665 | Canola | nucleus | 18.21 | 25.11 |
| CDY56081 | Canola | nucleus | 18.52 | 25.1 |
| CDX94901 | Canola | cytosol | 24.07 | 24.84 |
| CDY68603 | Canola | cytosol | 18.52 | 24.79 |
| CDY42740 | Canola | nucleus | 24.38 | 24.53 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.91 | 24.48 |
| CDX80258 | Canola | plastid | 26.23 | 23.94 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.91 | 23.75 |
| CDY28208 | Canola | cytosol | 16.98 | 23.71 |
| CDY01669 | Canola | plastid | 23.46 | 23.53 |
| CDY24951 | Canola | nucleus | 27.16 | 23.47 |
| CDX89343 | Canola | cytosol, mitochondrion | 25.31 | 23.3 |
| CDY61251 | Canola | cytosol | 25.93 | 23.27 |
| CDY07641 | Canola | nucleus | 26.85 | 23.26 |
| CDY53450 | Canola | cytosol | 22.84 | 22.98 |
| CDX88709 | Canola | cytosol, plastid | 27.78 | 22.84 |
| CDY33046 | Canola | plastid | 23.46 | 22.22 |
| CDX99105 | Canola | cytosol, plastid | 22.22 | 22.22 |
| CDX94342 | Canola | mitochondrion, nucleus | 25.93 | 21.71 |
| CDY48679 | Canola | cytosol, plastid | 22.22 | 21.56 |
| CDY58938 | Canola | nucleus | 23.46 | 17.23 |
| CDY69134 | Canola | cytosol | 15.43 | 17.18 |
| CDY03622 | Canola | nucleus | 23.46 | 17.04 |
| CDX78323 | Canola | cytosol | 14.81 | 16.67 |
| CDX90972 | Canola | cytosol | 16.36 | 15.82 |
| CDY01221 | Canola | cytosol | 10.19 | 15.14 |
| CDX85531 | Canola | cytosol | 15.74 | 14.87 |
| CDX69496 | Canola | cytosol | 12.96 | 14.58 |
| CDY11934 | Canola | nucleus | 28.09 | 13.96 |
| CDX69973 | Canola | cytosol | 15.43 | 13.89 |
| CDY21513 | Canola | cytosol | 15.12 | 13.76 |
| CDY34722 | Canola | cytosol | 16.36 | 13.59 |
| CDY26465 | Canola | cytosol | 14.2 | 13.57 |
| CDY34721 | Canola | cytosol | 16.05 | 13.33 |
| CDY02194 | Canola | peroxisome | 16.36 | 13.32 |
| CDY23599 | Canola | golgi, mitochondrion | 25.0 | 13.3 |
| CDY51628 | Canola | peroxisome | 16.05 | 12.81 |
Protein Annotations
| EnsemblPlants:CDY33437 | EnsemblPlantsGene:GSBRNA2T00054365001 | Gene3D:3.30.40.10 | GO:A0A078H7N4 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY33437 | ProteinID:CDY33437.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEA2CA | UniProt:A0A078H7N4 | MapMan:35.1 | : | : | : |
Description
BnaC01g32880DBnaC01g32880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7N4]
Coordinates
chrLK032314:+:282325..284707
Molecular Weight (calculated)
35024.7 Da
IEP (calculated)
4.388
GRAVY (calculated)
-0.541
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGNSTLS TAAAVDKLFF CYQCNRTVTI SISSADDPFC PRCSGGFLEE YEEPNPNPSP NLNPIGFLPM ADPFSTILPL LFGSSSAPPS SNPSLFGPRS
101: TENQHQPQGG GAFDPVSFLQ NHLQHLQSSG THVQFVIEDH PSDPFNRIPG NMGDYFFGPG LEQLIQQLAE NDPNRHGTPP ASKSAIDALL TVKVTLDMLN
201: SEMNQCAVCM DEFEDGRDVK QMPCKHVFHQ DCLMPWLELH NSCPVCRYEL PTDDPDYESR GQTQGQGGQM MSGGGQGSVE GQQTARRFSI QLPLRFRSQD
301: GSGSGSGAGG GSGSNLETRQ EDLD
101: TENQHQPQGG GAFDPVSFLQ NHLQHLQSSG THVQFVIEDH PSDPFNRIPG NMGDYFFGPG LEQLIQQLAE NDPNRHGTPP ASKSAIDALL TVKVTLDMLN
201: SEMNQCAVCM DEFEDGRDVK QMPCKHVFHQ DCLMPWLELH NSCPVCRYEL PTDDPDYESR GQTQGQGGQM MSGGGQGSVE GQQTARRFSI QLPLRFRSQD
301: GSGSGSGAGG GSGSNLETRQ EDLD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.